TCONS_00040927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040927
Unique NameTCONS_00040927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length476

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040927 ID=TCONS_00040927|Name=TCONS_00040927|organism=Clytia hemisphaerica|type=transcript|length=476bp
AATATCAAGAAATTCTGGAAGAACATCAAGTCTTTTCTTggtaaagataa
aaaaaaccattttccaaATTCCAtgaatcttcaaaataaagtctaCACAG
GATCTCATCAAATATCGGAAGGGTTCAATAAATACTTCTCTGAAGTGGCA
CCCAACCTTCTTAAAAGAATTTCCAAACATCATAATCTaaattcttatca
aaaaaaaattaattataacaACTCCAGCTTCTTTTTTCGACCAACAAATG
ATTATGAGGTGCTTACACATTTGAATAATCTTAACTCGAAGAAGGCCAAG
GACATTTACAATTTCCCCATAAACATCATCAAATGTACTGCTGATTTAAT
TTCCAATCCACTTGCAATACTAATCAACAAATCTCTGTCCACAGGTGTCT
TCCCAGAACTTCTGAAACATGCAAAAGTTACACCTCTTTTCAAAAGTGGG
AATAAGACGGATATAAAAAACTACAG
Run BLAST on NCBI

protein sequence of TCONS_00040927-protein

>TCONS_00040927-protein ID=TCONS_00040927-protein|Name=TCONS_00040927-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
NIKKFWKNIKSFLGKDKKNHFPNSMNLQNKVYTGSHQISEGFNKYFSEVA
PNLLKRISKHHNLNSYQKKINYNNSSFFFRPTNDYEVLTHLNNLNSKKAK
DIYNFPINIIKCTADLISNPLAILINKSLSTGVFPELLKHAKVTPLFKSG
NKTDIKNY
Run BLAST on NCBI

transcript from alignment at sc0002625:15245..15720

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040927 ID=TCONS_00040927|Name=TCONS_00040927|organism=Clytia hemisphaerica|type=transcript|length=476bp|location=Sequence derived from alignment at sc0002625:15245..15720 (Clytia hemisphaerica)
CTGTAGTTTTTTATATCCGTCTTATTCCCACTTTTGAAAAGAGGTGTAAC
TTTTGCATGTTTCAGAAGTTCTGGGAAGACACCTGTGGACAGAGATTTGT
TGATTAGTATTGCAAGTGGATTGGAAATTAAATCAGCAGTACATTTGATG
ATGTTTATGGGGAAATTGTAAATGTCCTTGGCCTTCTTCGAGTTAAGATT
ATTCAAATGTGTAAGCACCTCATAATCATTTGTTGGTCGAAAAAAGAAGC
TGGAGTtgttataattaatttttttttgataagaatttAGATTATGATGT
TTGGAAATTCTTTTAAGAAGGTTGGGTGCCACTTCAGAGAAGTATTTATT
GAACCCTTCCGATATTTGATGAGATCCTGTGtagactttattttgaagat
tcaTGGAATttggaaaatggttttttttatctttaccAAGAAAAGACTTG
ATGTTCTTCCAGAATTTCTTGATATT

Coding sequence (CDS) from alignment at sc0002625:15245..15720

>TCONS_00040927 ID=TCONS_00040927|Name=TCONS_00040927|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at sc0002625:15245..15720 (Clytia hemisphaerica)
GTAGTTTTTTATATCCGTCTTATTCCCACTTTTGAAAAGAGGTGTAACTT
TTGCATGTTTCAGAAGTTCTGGGAAGACACCTGTGGACAGAGATTTGTTG
ATTAGTATTGCAAGTGGATTGGAAATTAAATCAGCAGTACATTTGATGAT
GTTTATGGGGAAATTGTAAATGTCCTTGGCCTTCTTCGAGTTAAGATTAT
TCAAATGTGTAAGCACCTCATAATCATTTGTTGGTCGAAAAAAGAAGCTG
GAGTtgttataattaatttttttttgataagaatttAGATTATGATGTTT
GGAAATTCTTTTAAGAAGGTTGGGTGCCACTTCAGAGAAGTATTTATTGA
ACCCTTCCGATATTTGATGAGATCCTGTGtagactttattttgaagattc
aTGGAATttggaaaatggttttttttatctttaccAAGAAAAGACTTGAT
GTTCTTCCAGAATTTCTTGATATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024979XLOC_024979Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040927-exon-sc0002625-1491911889:15245..15720TCONS_00040927-exon-sc0002625-1491911889:15245..15720Clytia hemisphaericaexon
TCONS_00040927-exon-sc0002625-1510915933:15245..15720TCONS_00040927-exon-sc0002625-1510915933:15245..15720Clytia hemisphaericaexon
TCONS_00040927-exon-sc0002625-1575043694:15245..15720TCONS_00040927-exon-sc0002625-1575043694:15245..15720Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040927-proteinTCONS_00040927-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002625supercontigsc0002625:15245..15720 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.132875	0.388723	0.601794	0.735951	4.83813	1.41598	0.854162	2.5589	0.895773	1.38695	1.88469	1.76989	1.14883	2.47791	1.39202	1.45747	0.299247	1.53359	1.69499	0.886845	2.6979	1.69193	0.457057	2.21617	1.85461	3.05575	2.18638	2.13892	1.32733	1.35234
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top