TCONS_00040925 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040925
Unique NameTCONS_00040925
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length591

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040925 ID=TCONS_00040925|Name=TCONS_00040925|organism=Clytia hemisphaerica|type=transcript|length=591bp
CCCCCTGCCACTTTGTATTTTTCGATCAAACCAAGATGCTAAGATGACTG
GTCGCAGCTATCGCGCATACGGGGAGGAGTATGAAGTCAATGATTCAGGG
TAGCTGACGATACAGCTCTTATATTTGATACAAGAGAAGACGTCACTCAA
GGGATACCGCTCTGCATGACTCACTTTCAAAGGTTTTGGATGGAAGTCCA
TTCAGGACCTCCCGACTCAAAGTCTGTCGTTCTTTTCTGTTGCAAGCCGC
CTTGTTTGTATGAAGACCCGTCTACCTTTGATCAAGTCGACCTATCAAAC
ATAGAATTCGGTAACCGATTCATTCCCATCGTACAGGAATTCACATATCT
TGGAAGTTTTATCAGTTGTGACTCTTCAGATAACCTTGATGTTGATCGTA
GAATACAAAAGGCTAGCAATGCGTTCGGCATGATCAGAAATTCTTTGTTC
TCATCTTCAAAAATAAACGTTCGAGTGAAAGCAAATGTTTATCAAACGTT
CATATTGCCCATCTTGTtattctttgccacggaaagtcatgtgacatctt
tttcaaccaataagatttaataatttcgagggtaaaacaaa
Run BLAST on NCBI

protein sequence of TCONS_00040925-protein

>TCONS_00040925-protein ID=TCONS_00040925-protein|Name=TCONS_00040925-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MTHFQRFWMEVHSGPPDSKSVVLFCCKPPCLYEDPSTFDQVDLSNIEFGN
RFIPIVQEFTYLGSFISCDSSDNLDVDRRIQKASNAFGMIRNSLFSSSKI
NVRVKANVYQTFILPILLFFATESHVTSFSTNKI
Run BLAST on NCBI

transcript from alignment at sc0002625:9203..9793

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040925 ID=TCONS_00040925|Name=TCONS_00040925|organism=Clytia hemisphaerica|type=transcript|length=591bp|location=Sequence derived from alignment at sc0002625:9203..9793 (Clytia hemisphaerica)
tttgttttaccctcgaaattattaaatcttattggttgaaaaagatgtca
catgactttccgtggcaaagaataACAAGATGGGCAATATGAACGTTTGA
TAAACATTTGCTTTCACTCGAACGTTTATTTTTGAAGATGAGAACAAAGA
ATTTCTGATCATGCCGAACGCATTGCTAGCCTTTTGTATTCTACGATCAA
CATCAAGGTTATCTGAAGAGTCACAACTGATAAAACTTCCAAGATATGTG
AATTCCTGTACGATGGGAATGAATCGGTTACCGAATTCTATGTTTGATAG
GTCGACTTGATCAAAGGTAGACGGGTCTTCATACAAACAAGGCGGCTTGC
AACAGAAAAGAACGACAGACTTTGAGTCGGGAGGTCCTGAATGGACTTCC
ATCCAAAACCTTTGAAAGTGAGTCATGCAGAGCGGTATCCCTTGAGTGAC
GTCTTCTCTTGTATCAAATATAAGAGCTGTATCGTCAGCTACCCTGAATC
ATTGACTTCATACTCCTCCCCGTATGCGCGATAGCTGCGACCAGTCATCT
TAGCATCTTGGTTTGATCGAAAAATACAAAGTGGCAGGGGG

Coding sequence (CDS) from alignment at sc0002625:9203..9793

>TCONS_00040925 ID=TCONS_00040925|Name=TCONS_00040925|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0002625:9203..9793 (Clytia hemisphaerica)
ttaaatcttattggttgaaaaagatgtcacatgactttccgtggcaaaga
ataACAAGATGGGCAATATGAACGTTTGATAAACATTTGCTTTCACTCGA
ACGTTTATTTTTGAAGATGAGAACAAAGAATTTCTGATCATGCCGAACGC
ATTGCTAGCCTTTTGTATTCTACGATCAACATCAAGGTTATCTGAAGAGT
CACAACTGATAAAACTTCCAAGATATGTGAATTCCTGTACGATGGGAATG
AATCGGTTACCGAATTCTATGTTTGATAGGTCGACTTGATCAAAGGTAGA
CGGGTCTTCATACAAACAAGGCGGCTTGCAACAGAAAAGAACGACAGACT
TTGAGTCGGGAGGTCCTGAATGGACTTCCATCCAAAACCTTTGAAAGTGA
GTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024977XLOC_024977Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040925-proteinTCONS_00040925-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040925-exon-sc0002625-1491911889:9203..9793TCONS_00040925-exon-sc0002625-1491911889:9203..9793Clytia hemisphaericaexon
TCONS_00040925-exon-sc0002625-1510915933:9203..9793TCONS_00040925-exon-sc0002625-1510915933:9203..9793Clytia hemisphaericaexon
TCONS_00040925-exon-sc0002625-1575043694:9203..9793TCONS_00040925-exon-sc0002625-1575043694:9203..9793Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002625supercontigsc0002625:9203..9793 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.327901	0.291116	0.572277	1.11865	0.385473	0.101981	0.307222	0.340509	0.379038	0.773738	0.976658	0.341877	0.882135	0.619727	0.522189	1.02253	1.20784	0.407615	1.04848	0.443399	0.398072	0.16084	1.03282	0.547611	0.671127	0.602709	0.616743	0	0.232025	0.129211
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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