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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040924 ID=TCONS_00040924|Name=TCONS_00040924|organism=Clytia hemisphaerica|type=transcript|length=1591bp
GTAGAATAACGGACACGAAATTATATGGTAGCACTGCGTCTTTGAATCAA
ACTCAAACATAACACAAAGTCGTGACACATCAACCAAAAATGGGTTTTTC
CAGGATCCTTTTATTGGTCAGCTTAATAAGCCTAGGAAACCTACCAAAGA
CAGGTGGTTTAAGTCAAGAGGAACAGTTATGTAAATATTCCTTTCCTAAT
GAACCCGGTAAAGCTTACGTTTGTATGGGCGTACGTGGATTAGCCAATCA
CGTTCCAGCAGGTGCTGTGCTTGTTTTCGCCCTGGATTACTGGTTTGGTA
TTGATCCTAAACCATGGGATTTGGTGAAAAAGGATGTGGAAAAACTAATT
GATGAGAAATTTGAGGCGTATACGATCAAATCGATGAACCAATGGCATCA
ATCAATGTCGAATCGAGTACAATCGTGTAAACGAAAAATCAACCCTACTA
TTCGTTTTTCATGCTACAAGAATTTGCAAGAAGATCTATCAGGTTATGAA
CCTCTGTTTCGTGGGTCCAGCACTAAGGAGATTGCAATGTCTATCAAATA
TTACGATATCTTTGTGACAACTTATATCTCTGTGTCACACGTGCTTCGTA
ACATGTCCAGTCCAACAATGCAAGCATCCATCGATCGTGATATCAAATTC
AAAGCTAGAAAATTTGCTACTTATTTGACCAGAGCTGTTAAAACCACCAA
AGGATACAGCTGCCGTTATATTAAAGTCAAATTAGAAGAAAGTTACGTGT
TGTGGAAAGAAGATCGTTTAGTTTGGCCCAAAGATGAAGATATTCCGAAA
TATATGGATCTAAGAATCGAAGACGTCCGCAAGGAATTGACAAACAGTTC
TCACAAATGTCGTTACTACGACACAACCAACACCTACATCTCCAAAGTTA
TCGATATCAGAGACGGTAGCGAATATCCAGGGGGTGGCTTCCAGTATAAA
TACTGTCGCAATAGTCTTGCGATTGCTGATATGGTCCCCCTGACGTTCGC
TTATTGGAAACCGTTCATGAAAATGTGTGGTNCGATTGCTGATATGGTCC
CCCTGACGTTCGCTTATTGGAAACCGTTCATGAAAATGTGTGGTGATTCT
GATGATAAGAAATGGATCCATAAAATCGAAGCTCGATTGGAACTCTTAAA
GTACATGTGATTGTAAGTGTGGTAAAGAGCAAggggaaatattcaaaatt
ggTTATAAATTTCGGAAAGTTTTTATCTTAagtcgacgctctctaattca
acaTTCTACTAACGATTTATTGTTTAATAATATTGAAAGAAACTATCTAC
AATTCGATACGGTCCATTCTTCGAAAAAAATCCCCCTTGAAATCGAATCA
GAGAGCACCAACTATATATcatgaatttaaattttcataatatTTATACG
GTATGAGAATTTGTAATTTAAAATATCCGATGAATTCGATGACATTCATG
ATATNCTATCTACAATTCGATACGGTCCATTCTTCGAAAAAAATCCCCCT
TGAAATCGAATCAGAGAGCACCAACTATATATCATGAATTTAAATTTATA
TAATATTTATACGGTATGAGAATTTGTAATTTAAAATATCC Run BLAST on NCBI protein sequence of TCONS_00040924-protein >TCONS_00040924-protein ID=TCONS_00040924-protein|Name=TCONS_00040924-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
MGFSRILLLVSLISLGNLPKTGGLSQEEQLCKYSFPNEPGKAYVCMGVRG
LANHVPAGAVLVFALDYWFGIDPKPWDLVKKDVEKLIDEKFEAYTIKSMN
QWHQSMSNRVQSCKRKINPTIRFSCYKNLQEDLSGYEPLFRGSSTKEIAM
SIKYYDIFVTTYISVSHVLRNMSSPTMQASIDRDIKFKARKFATYLTRAV
KTTKGYSCRYIKVKLEESYVLWKEDRLVWPKDEDIPKYMDLRIEDVRKEL
TNSSHKCRYYDTTNTYISKVIDIRDGSEYPGGGFQYKYCRNSLAIADMVP
LTFAYWKPFMKMCGXIADMVPLTFAYWKPFMKMCGDSDDKKWIHKIEARL
ELLKYM Run BLAST on NCBI transcript from alignment at sc0002625:4092..5682 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040924 ID=TCONS_00040924|Name=TCONS_00040924|organism=Clytia hemisphaerica|type=transcript|length=1591bp|location=Sequence derived from alignment at sc0002625:4092..5682 (Clytia hemisphaerica)
GGATATTTTAAATTACAAATTCTCATACCGTATAAATATTATATAAATTT
AAATTCATGATATATAGTTGGTGCTCTCTGATTCGATTTCAAGGGGGATT
TTTTTCGAAGAATGGACCGTATCGAATTGTAGATAGNATATCATGAATGT
CATCGAATTCATCGGATATTTTAAATTACAAATTCTCATACCGTATAAat
attatgaaaatttaaattcatgATATATAGTTGGTGCTCTCTGATTCGAT
TTCAAGGGGGATTTTTTTCGAAGAATGGACCGTATCGAATTGTAGATAGT
TTCTTTCAATATTATTAAACAATAAATCGTTAGTAGAAtgttgaattaga
gagcgtcgactTAAGATAAAAACTTTCCGAAATTTATAAccaattttgaa
tatttccccTTGCTCTTTACCACACTTACAATCACATGTACTTTAAGAGT
TCCAATCGAGCTTCGATTTTATGGATCCATTTCTTATCATCAGAATCACC
ACACATTTTCATGAACGGTTTCCAATAAGCGAACGTCAGGGGGACCATAT
CAGCAATCGNACCACACATTTTCATGAACGGTTTCCAATAAGCGAACGTC
AGGGGGACCATATCAGCAATCGCAAGACTATTGCGACAGTATTTATACTG
GAAGCCACCCCCTGGATATTCGCTACCGTCTCTGATATCGATAACTTTGG
AGATGTAGGTGTTGGTTGTGTCGTAGTAACGACATTTGTGAGAACTGTTT
GTCAATTCCTTGCGGACGTCTTCGATTCTTAGATCCATATATTTCGGAAT
ATCTTCATCTTTGGGCCAAACTAAACGATCTTCTTTCCACAACACGTAAC
TTTCTTCTAATTTGACTTTAATATAACGGCAGCTGTATCCTTTGGTGGTT
TTAACAGCTCTGGTCAAATAAGTAGCAAATTTTCTAGCTTTGAATTTGAT
ATCACGATCGATGGATGCTTGCATTGTTGGACTGGACATGTTACGAAGCA
CGTGTGACACAGAGATATAAGTTGTCACAAAGATATCGTAATATTTGATA
GACATTGCAATCTCCTTAGTGCTGGACCCACGAAACAGAGGTTCATAACC
TGATAGATCTTCTTGCAAATTCTTGTAGCATGAAAAACGAATAGTAGGGT
TGATTTTTCGTTTACACGATTGTACTCGATTCGACATTGATTGATGCCAT
TGGTTCATCGATTTGATCGTATACGCCTCAAATTTCTCATCAATTAGTTT
TTCCACATCCTTTTTCACCAAATCCCATGGTTTAGGATCAATACCAAACC
AGTAATCCAGGGCGAAAACAAGCACAGCACCTGCTGGAACGTGATTGGCT
AATCCACGTACGCCCATACAAACGTAAGCTTTACCGGGTTCATTAGGAAA
GGAATATTTACATAACTGTTCCTCTTGACTTAAACCACCTGTCTTTGGTA
GGTTTCCTAGGCTTATTAAGCTGACCAATAAAAGGATCCTGGAAAAACCC
ATTTTTGGTTGATGTGTCACGACTTTGTGTTATGTTTGAGTTTGATTCAA
AGACGCAGTGCTACCATATAATTTCGTGTCCGTTATTCTAC Coding sequence (CDS) from alignment at sc0002625:4092..5682 >TCONS_00040924 ID=TCONS_00040924|Name=TCONS_00040924|organism=Clytia hemisphaerica|type=CDS|length=1071bp|location=Sequence derived from alignment at sc0002625:4092..5682 (Clytia hemisphaerica)
TCACATGTACTTTAAGAGTTCCAATCGAGCTTCGATTTTATGGATCCATT
TCTTATCATCAGAATCACCACACATTTTCATGAACGGTTTCCAATAAGCG
AACGTCAGGGGGACCATATCAGCAATCGNACCACACATTTTCATGAACGG
TTTCCAATAAGCGAACGTCAGGGGGACCATATCAGCAATCGCAAGACTAT
TGCGACAGTATTTATACTGGAAGCCACCCCCTGGATATTCGCTACCGTCT
CTGATATCGATAACTTTGGAGATGTAGGTGTTGGTTGTGTCGTAGTAACG
ACATTTGTGAGAACTGTTTGTCAATTCCTTGCGGACGTCTTCGATTCTTA
GATCCATATATTTCGGAATATCTTCATCTTTGGGCCAAACTAAACGATCT
TCTTTCCACAACACGTAACTTTCTTCTAATTTGACTTTAATATAACGGCA
GCTGTATCCTTTGGTGGTTTTAACAGCTCTGGTCAAATAAGTAGCAAATT
TTCTAGCTTTGAATTTGATATCACGATCGATGGATGCTTGCATTGTTGGA
CTGGACATGTTACGAAGCACGTGTGACACAGAGATATAAGTTGTCACAAA
GATATCGTAATATTTGATAGACATTGCAATCTCCTTAGTGCTGGACCCAC
GAAACAGAGGTTCATAACCTGATAGATCTTCTTGCAAATTCTTGTAGCAT
GAAAAACGAATAGTAGGGTTGATTTTTCGTTTACACGATTGTACTCGATT
CGACATTGATTGATGCCATTGGTTCATCGATTTGATCGTATACGCCTCAA
ATTTCTCATCAATTAGTTTTTCCACATCCTTTTTCACCAAATCCCATGGT
TTAGGATCAATACCAAACCAGTAATCCAGGGCGAAAACAAGCACAGCACC
TGCTGGAACGTGATTGGCTAATCCACGTACGCCCATACAAACGTAAGCTT
TACCGGGTTCATTAGGAAAGGAATATTTACATAACTGTTCCTCTTGACTT
AAACCACCTGTCTTTGGTAGGTTTCCTAGGCTTATTAAGCTGACCAATAA
AAGGATCCTGGAAAAACCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040924-exon-sc0002625-1491911889:4092..5682 | TCONS_00040924-exon-sc0002625-1491911889:4092..5682 | Clytia hemisphaerica | exon |
| TCONS_00040924-exon-sc0002625-1510915933:4092..5682 | TCONS_00040924-exon-sc0002625-1510915933:4092..5682 | Clytia hemisphaerica | exon |
| TCONS_00040924-exon-sc0002625-1575043694:4092..5682 | TCONS_00040924-exon-sc0002625-1575043694:4092..5682 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002625 | supercontig | sc0002625:4092..5682 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005639 | Pest_crys_N |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0090729 | toxin activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0090729 |
toxin activity |
Blast
The following BLAST results are available for this feature:
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