TCONS_00040918 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040918
Unique NameTCONS_00040918
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length274

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040918 ID=TCONS_00040918|Name=TCONS_00040918|organism=Clytia hemisphaerica|type=transcript|length=274bp
NATCTGGGTCAATGAACAAAATTTGTTGTCCAATACGAGGAAGCTGAATT
TGTTGAGAGTTACTTTTATTTCTACGatcagtctttttcttatctCCCAC
CAGATGCGTCGTTTCAACTGTTTGGATCTCTGGTATGTTTTTGTCAGGTT
TAGTAAGCTTAGGTTCTGCGATCGGTTTTTCAACTGGAATCATAACTGTT
TCATTACTAACAATATCGATGTCTAATAGGTCTGGAATGGGTACTTGTGG
TTGTTCATCTTCATCTGGTACGNN
Run BLAST on NCBI

transcript from alignment at sc0002623:12550..12823

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040918 ID=TCONS_00040918|Name=TCONS_00040918|organism=Clytia hemisphaerica|type=transcript|length=274bp|location=Sequence derived from alignment at sc0002623:12550..12823 (Clytia hemisphaerica)
NNCGTACCAGATGAAGATGAACAACCACAAGTACCCATTCCAGACCTATT
AGACATCGATATTGTTAGTAATGAAACAGTTATGATTCCAGTTGAAAAAC
CGATCGCAGAACCTAAGCTTACTAAACCTGACAAAAACATACCAGAGATC
CAAACAGTTGAAACGACGCATCTGGTGGGagataagaaaaagactgatCG
TAGAAATAAAAGTAACTCTCAACAAATTCAGCTTCCTCGTATTGGACAAC
AAATTTTGTTCATTGACCCAGATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024971XLOC_024971Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040918-exon-sc0002623-1491911889:12550..12823TCONS_00040918-exon-sc0002623-1491911889:12550..12823Clytia hemisphaericaexon
TCONS_00040918-exon-sc0002623-1510915933:12550..12823TCONS_00040918-exon-sc0002623-1510915933:12550..12823Clytia hemisphaericaexon
TCONS_00040918-exon-sc0002623-1575043694:12550..12823TCONS_00040918-exon-sc0002623-1575043694:12550..12823Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002623supercontigsc0002623:12550..12823 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.86566	4.30686	5.88998	0	3.22246	2.33624	0.899982	1.64915	1.80628	0.559344	0	3.54257	2.05347	1.69196	0.304287	0.964637	0.402279	0.824646	0.569647	1.55141	2.7675	1.51631	0	1.57467	4.60276	1.02696	0.73479	0.784188	1.18956	0.0721182
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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