TCONS_00040917 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040917
Unique NameTCONS_00040917
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040917 ID=TCONS_00040917|Name=TCONS_00040917|organism=Clytia hemisphaerica|type=transcript|length=244bp
TACAGCCCAAACAAGTGCATTCTGTATGGAGCACTGAGTATCAGCAACAA
TTTTGTGGATCATGTTTCCTAGAGTGGCATTATGTCTCTCGACTACCCCA
TTTGGCCATGGTGATTCAGCAGCTGTTGAAGCTATCGATACGTCTAAAAG
TTCTGCTACGTCACGAAGCAGTTCATTGTTAAACTCTCCTCCATTGTCAG
CAAAGATTGATTGTGGTGAACCGAAAATAGCAACCCAGTGTTNN
Run BLAST on NCBI

transcript from alignment at sc0002623:11761..12004

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040917 ID=TCONS_00040917|Name=TCONS_00040917|organism=Clytia hemisphaerica|type=transcript|length=244bp|location=Sequence derived from alignment at sc0002623:11761..12004 (Clytia hemisphaerica)
NNAACACTGGGTTGCTATTTTCGGTTCACCACAATCAATCTTTGCTGACA
ATGGAGGAGAGTTTAACAATGAACTGCTTCGTGACGTAGCAGAACTTTTA
GACGTATCGATAGCTTCAACAGCTGCTGAATCACCATGGCCAAATGGGGT
AGTCGAGAGACATAATGCCACTCTAGGAAACATGATCCACAAAATTGTTG
CTGATACTCAGTGCTCCATACAGAATGCACTTGTTTGGGCTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024970XLOC_024970Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040917-exon-sc0002623-1491911889:11761..12004TCONS_00040917-exon-sc0002623-1491911889:11761..12004Clytia hemisphaericaexon
TCONS_00040917-exon-sc0002623-1510915933:11761..12004TCONS_00040917-exon-sc0002623-1510915933:11761..12004Clytia hemisphaericaexon
TCONS_00040917-exon-sc0002623-1575043694:11761..12004TCONS_00040917-exon-sc0002623-1575043694:11761..12004Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002623supercontigsc0002623:11761..12004 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.71861	5.75106	1.87895	4.13059	8.11723	8.8593	9.65095	18.363	12.9324	9.16413	1.9136	9.79824	4.62806	2.53543	3.74791	1.20927	0	2.67399	1.79328	1.34392	6.27502	1.0361	0	0.924964	12.518	13.0339	2.21849	3.59331	0	0.953839
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top