TCONS_00040916 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040916
Unique NameTCONS_00040916
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length804

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040916 ID=TCONS_00040916|Name=TCONS_00040916|organism=Clytia hemisphaerica|type=transcript|length=804bp
AATTTATTTCTGGGATAGCCCATTGCACTTAGTAGTGGTATGAAGAGTTT
GCTAGCTATGGCTATGGGTCCTGGAATCATTTATAGCCCAATCGCATATC
AAGAAGTGTAAATTCTTAAATTTGTTCTCTTCTTTATTTATTACAGCGAA
GCTGGCATGGAAACGTGCAGTACTGCGTGTGCGTGAATTGTGTGATCTGT
GCGCCACAAGTATCTTCAATAACCATTGGACCTGCGAAGCTTGTGGTCTC
AGTATTTGCTTGGACTGCTTTTTCGCCAAGTTCAAGAAGAAAGGGAAGAA
TCTTCCATGGGCGGAGTGTGAATCAACAGGGATGGACCATAAAATCGAAG
AGTTGCGAGTCACTCAAATCATACCGGATGGAATACTCGAGACTTTATAC
GAAGACCTGTTAAAAACTTGCGAAGAAATAAAGTTAGACTTTAAAAGGTT
GGATTTGTTGGAATATCCAGAAGCAACGGACATGAGTATATTGGAATCAA
ATATCAATTGGCGAAAGAACCCGTTGGACTCTATCGTAGACCAAATGAAT
GTCAATATAGAGAGTGCAATTCCTTCCACGCCGGCCAACTGTGCATGGTT
TTGTGATGGTCGAATGCTACACATTAATCAACCACGTCTTACGTCCCAAG
CAATGGACCTCTTCAAGTCCGAATGGGCGAAAGGAAAGGTTTGTTACAAT
acataataaaccagctgcgctggaagctccggcttaagagattaaaagat
gtgaaagatgagcttgttgagttagttgtgttagaacgttgacCACAAAC
Tagt
Run BLAST on NCBI

protein sequence of TCONS_00040916-protein

>TCONS_00040916-protein ID=TCONS_00040916-protein|Name=TCONS_00040916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MDHKIEELRVTQIIPDGILETLYEDLLKTCEEIKLDFKRLDLLEYPEATD
MSILESNINWRKNPLDSIVDQMNVNIESAIPSTPANCAWFCDGRMLHINQ
PRLTSQAMDLFKSEWAKGKVCYNT
Run BLAST on NCBI

transcript from alignment at sc0002623:5912..8501-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040916 ID=TCONS_00040916|Name=TCONS_00040916|organism=Clytia hemisphaerica|type=transcript|length=2590bp|location=Sequence derived from alignment at sc0002623:5912..8501- (Clytia hemisphaerica)
AATTTATTTCTGGGATAGCCCATTGCACTTAGTAGTGGTATGAAGAGTTT
GCTAGCTATGGCTATGGGTCCTGGAATCATTTATAGCCCAATCGCATATC
AAGAAGTGTAAATTCTTAAATTTGTTCTCTTCTTTATTTATTACAGCGAA
GCTGGCATGGAAACGTGCAGTACTGCGTGTGCGTGAATTGTGTGATCTGT
GCGCCACAAGTATCTTCAATAACCATTGGACCTGCGAAGCTTGTGGTCTC
AGTATTTGCTTGGACTGCTTTTTCGCCAAGTTCAAGAAGAAAGGTTGGTA
CAAGAAACCATTATGGGTCTCGCTTTCAGATAGAATTGTTATTTGCATTA
TTATTCGATGCATTTGCACATTTGATATATATTCCTAAAAGGCCATCACG
TCATCAATTTTGCTACAAAAGTGCAAGTGCTAACGAACACTGCAGTAGTA
GTGGTCGAATACGGGTTTAAGCCGTGTAGAAAAGTTGAAATATTAAAATT
AAAAACTAAATTTTACTTTTCAGGGAAGAATCTTCCATGGGCGGAGTGTG
AATCAACAGGGATGGACCATAAAATCGAAGAGTTGCGAGTCACTCAAATC
ATACCGGATGGAAGTAAGATAATGTGGCTGCCCTTTTTATGATGAAAGTT
GTCATATACGGTAGAGTCTTCATAATTCGAACACACACAAAATTTATTCG
AATTATGGAAACTCTTCTTAGGGATTTTTCAAATGGAGGGACCAAAAAGT
TTGTGCATGTTCAAGAGACTTCATTGCATTTCTCCTTTTACAAGCTGTCA
CGTAACAATCAAGTTGTTTTTCACCGACCACTCCGATTCTTCTCCCTCTG
AATTATACCCCCTATTTCTAAATTAAAGAGATGACAATACTTAGTTATAA
TAGACCAAACATTGAATTGATGAATAATTTTAAAAGTATACAATGGATTA
TATTCATTTTAGTACTCGAGACTTTATACGAAGACCTGTTAAAAACTTGC
GAAGAAATAAAGTTAGACTTTAAAAGGTTGGATTTGTTGGAATATCCAGA
AGCAACGGACATGAGTATATTGGAATCAAATATCAATTGGCGAAAGGTTT
GGAATTAATTATTCATTGTTTATAGAAGTATGACCCTGATGGACCTTATA
ATCAAGACCTAGAAGACCTCTACCATCTTTCCTCTAAGATCTTTATAACT
ATGGGACGGACGACATTTGTTTTATAATAAGCTGATATTCAATGGGTAAA
AGTTGGTTATTGTGATTTATTAACCCGAGGTGACCAACGAAAACCTATTG
AATATATGTGTTTTATTATATACCTAGAGTCAAAAATAAAACATTAATTA
TGTTAATAGTCAAACATTTCACTTAAAACACTCCCATAATCGAGCGTTCG
AATGTTTTTCTTTTTTGATGATTTCATAAAATTTGTTCATGAAACTGCAT
GAAAGTGACAATCGATTTATTTTAATGAATTTCTTTGATAACAACAAGAG
CGACAAAAAAAAATCAAACTTTGAAAACAAAATTTGAAAAAGAATTTTTA
CCGTGGTATAATAGCCATGGTATATCAGGAATTATTCAATGGCTGTTCTT
GCCTACAGGTATATAATATGTAATAAGACATATTAAAGCCTAGTAGTGCT
GTCCTCTGATATTAATTAGTGGCGCGGCCTAAAACATCAGGCAGTCAGGA
GAATTCAAATATATGGTCGGATTTGGGTGAAATTTGACATACTTGTTCCT
TGGGTGAATATCTGGAGGCTTTTTTCATTTTTGAAAAATCAGGCTAAAAC
ATTGGGGTAGCCTGGAGACTTTGGCACACTTGTTCCCCTGGGATATATCT
TGCATTTTTCCAAAATTTCGATTTTTGGGGCCTGGGTACTAATTCTTTTG
TTTGTTCTGCTACAATCAGGCCTATTAACAATTTAAAGCTACTGAAATTG
AAATTGAACGTTCGACTATTAATCAGGCTCAGGTTCGGTATTCTGATAGT
AACACGTTCATTATTAGTAAAATCGGAAAGTGACGCAAGTAGCACTGGAG
TACGAAGTACTGGAGGCCTCAAATTTCCTTAAGTTTGATTATTTATAATG
CTAAAAACAAAATACTATGAAAAGACATGAAGTTTTATTTTATTTCCAGC
AAAAGCTTTTCGGTAAAACCATCTTCAGTGTTAGTAATAGAAATAACTTT
TTAAACATCTAGCACTGAAAATGGTTTTACCGAAAAGCCTTTGCTGAAAA
TAAAATAAAACATAAAATGTCTTTTTTCTTATAAAATACTTTAAAATTTC
TAGAACCCGTTGGACTCTATCGTAGACCAAATGAATGTCAATATAGAGAG
TGCAATTCCTTCCACGCCGGCCAACTGTGCATGGTTTTGTGATGGTCGAA
TGCTACACATTAATCAACCACGTCTTACGTCCCAAGCAATGGACCTCTTC
AAGTCCGAATGGGCGAAAGGAAAGGTTTGTTACAATACATAATAAACCAG
CTGCGCTGGAAGCTCCGGCTTAAGAGATTAAAAGATGTGAAAGATGAGCT
TGTTGAGTTAGTTGTGTTAGAACGTTGACCACAAACTAGT

Coding sequence (CDS) from alignment at sc0002623:5912..8501-

>TCONS_00040916 ID=TCONS_00040916|Name=TCONS_00040916|organism=Clytia hemisphaerica|type=CDS|length=1125bp|location=Sequence derived from alignment at sc0002623:5912..8501- (Clytia hemisphaerica)
AACCCGTTGGACTCTATCGTAGACCAAATGAATGTCAATATAGAGAGTGC
AATTCCTTCCACGCCGGCCAACTGTGCATGGTTTTGTGATGGTCGAATGC
TACACATTAATCAACCACGTCTTACGTCCCAAGCAATGGACCTCTTCAAG
TCCGAATGGGCGAAAGGAAAGGTTTGTTACAATACATAATACTCGAGACT
TTATACGAAGACCTGTTAAAAACTTGCGAAGAAATAAAGTTAGACTTTAA
AAGGTTGGATTTGTTGGAATATCCAGAAGCAACGGACATGAGTATATTGG
AATCAAATATCAATTGGCGAAAGATGGACCATAAAATCGAAGAGTTGCGA
GTCACTCAAATCATACCGGATGGAAAACCCGTTGGACTCTATCGTAGACC
AAATGAATGTCAATATAGAGAGTGCAATTCCTTCCACGCCGGCCAACTGT
GCATGGTTTTGTGATGGTCGAATGCTACACATTAATCAACCACGTCTTAC
GTCCCAAGCAATGGACCTCTTCAAGTCCGAATGGGCGAAAGGAAAGGTTT
GTTACAATACATAATACTCGAGACTTTATACGAAGACCTGTTAAAAACTT
GCGAAGAAATAAAGTTAGACTTTAAAAGGTTGGATTTGTTGGAATATCCA
GAAGCAACGGACATGAGTATATTGGAATCAAATATCAATTGGCGAAAGAT
GGACCATAAAATCGAAGAGTTGCGAGTCACTCAAATCATACCGGATGGAA
AACCCGTTGGACTCTATCGTAGACCAAATGAATGTCAATATAGAGAGTGC
AATTCCTTCCACGCCGGCCAACTGTGCATGGTTTTGTGATGGTCGAATGC
TACACATTAATCAACCACGTCTTACGTCCCAAGCAATGGACCTCTTCAAG
TCCGAATGGGCGAAAGGAAAGGTTTGTTACAATACATAATACTCGAGACT
TTATACGAAGACCTGTTAAAAACTTGCGAAGAAATAAAGTTAGACTTTAA
AAGGTTGGATTTGTTGGAATATCCAGAAGCAACGGACATGAGTATATTGG
AATCAAATATCAATTGGCGAAAGATGGACCATAAAATCGAAGAGTTGCGA
GTCACTCAAATCATACCGGATGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024969XLOC_024969Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040916-proteinTCONS_00040916-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040916-exon-sc0002623-1575043694:8209..8501TCONS_00040916-exon-sc0002623-1575043694:8209..8501Clytia hemisphaericaexon
TCONS_00040916-exon-sc0002623-1575043694:7889..7978TCONS_00040916-exon-sc0002623-1575043694:7889..7978Clytia hemisphaericaexon
TCONS_00040916-exon-sc0002623-1575043694:7406..7539TCONS_00040916-exon-sc0002623-1575043694:7406..7539Clytia hemisphaericaexon
TCONS_00040916-exon-sc0002623-1575043694:5912..6198TCONS_00040916-exon-sc0002623-1575043694:5912..6198Clytia hemisphaericaexon
TCONS_00040916-exon-sc0002623-1510915933:8209..8501TCONS_00040916-exon-sc0002623-1510915933:8209..8501Clytia hemisphaericaexon
TCONS_00040916-exon-sc0002623-1510915933:7889..7978TCONS_00040916-exon-sc0002623-1510915933:7889..7978Clytia hemisphaericaexon
TCONS_00040916-exon-sc0002623-1510915933:7406..7539TCONS_00040916-exon-sc0002623-1510915933:7406..7539Clytia hemisphaericaexon
TCONS_00040916-exon-sc0002623-1510915933:5912..6198TCONS_00040916-exon-sc0002623-1510915933:5912..6198Clytia hemisphaericaexon
TCONS_00040916-exon-sc0002623-1491911889:8209..8501TCONS_00040916-exon-sc0002623-1491911889:8209..8501Clytia hemisphaericaexon
TCONS_00040916-exon-sc0002623-1491911889:7889..7978TCONS_00040916-exon-sc0002623-1491911889:7889..7978Clytia hemisphaericaexon
TCONS_00040916-exon-sc0002623-1491911889:7406..7539TCONS_00040916-exon-sc0002623-1491911889:7406..7539Clytia hemisphaericaexon
TCONS_00040916-exon-sc0002623-1491911889:5912..6198TCONS_00040916-exon-sc0002623-1491911889:5912..6198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002623supercontigsc0002623:5912..8501 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.25849	0.494863	1.32753	1.86605	32.9466	34.7062	21.2426	35.8792	25.9433	24.3056	21.6456	32.8217	14.8526	16.7688	0.284467	0.413523	0.894096	0.927573	0.515274	0.82212	1.67715	1.33847	1.41083	1.59706	7.80784	25.9762	1.08465	1.0436	0.783375	2.05484
Blast
[Close]
BLAST of TCONS_00040916 vs. Swiss-Prot (Human)
Match: JHD2C (Probable JmjC domain-containing histone demethylation protein 2C OS=Homo sapiens GN=JMJD1C PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.909e-19
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = 2 
Query:  146 AKLAWKRAVLRVRELCDLCATSIFNNHWTCEACGLSICLDCFFAKFKKKGKN---LPWAECESTGMDHKIEELRVTQIIPDGILETLYEDLLKTCEE 427
            AK+AWKRAV  VRE+CD C  ++FN HW C+ CG  +CLDC+ AK +K  ++     W +C   G  H  + L  TQIIP  +L  L  D + T  E
Sbjct: 1831 AKIAWKRAVRGVREMCDACEATLFNIHWVCQKCGFVVCLDCYKAKERKSSRDKELYAWMKC-VKGQPHDHKHLMPTQIIPGSVLTDLL-DAMHTLRE 1925
The following BLAST results are available for this feature:
BLAST of TCONS_00040916 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
JHD2C4.909e-1944.33Probable JmjC domain-containing histone demethylat... [more]
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