TCONS_00040911 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040911
Unique NameTCONS_00040911
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1209

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040911 ID=TCONS_00040911|Name=TCONS_00040911|organism=Clytia hemisphaerica|type=transcript|length=1209bp
CAAGCGTGGCTCCAGCAAATGTGAATTTACAAAAAGTGTAATACGAGCGT
AATATCTCTCTCTTAAAATTTTATATGTGGTGTGATTGGaagacttttga
aaatggtaagaatatttttttttagttttcctttatgatttcaaaatttg
tataCATATTAGGGACCAAATCTTAAATCTGTTCCCCTAGAGCCCTAGAG
GTAATTCTAGTTAAGCagtttcattattttcttcttgtttAATAAGTGTT
ATTGATTCTTTGCCAACCTAATGGCGGGTGCTTATTTTGTTGTGCTTCTG
TCTCATTGATTGTATTGATTAACCTTTCATTCCAATGCCCCAAAATCTCT
AAAACCTTTACCATTAATTAGGATCATGAAATTTTATCCATTCGAGTAAA
TGTAATTCAGTGCTTGCTAGCCTTATGGCGGGTGCTATTTTTGTTGTGCT
TGTCAGCCTTCTGGCGGGTTAACCTTTTACTCGAATGACCTAAAACTTTC
ACAAAtaaaatcatcaatttttttctattcgAGTAAATTTAATTCAGTGC
TTGCTAGCCTTATGGTGGGTGCTAATTTTATTGTGCTTGTCAGCCTTCTG
GCGGGTTAACCTTTTACTCGAATGACCTAAAACTTATACAAATaaaatca
tcatcaattttttttccatttgttGTTTGTAAAATACGTAAGACatattt
gtatatttttcgTCCTTGCTTCAATTAAGATCAGGGTTACAAAAACTGAA
GTTTCTTTGTCGTTCtctcttttccttttttcaggacAACCGATGGTAAC
TGGGCGTAGCTGACAGAAAAGAACGTGACGATCATAGAACAGATAACGCC
AAAAAAGCATCCAAGCTACATTAAGTTACCCACATTCAAAATTGACGAGG
CTAAAGAGATGAAAGCTTTTTGTAACTATCAATTGACCGATTTTAACAAT
TACTGTTGATGACGTGGAGTAGAGCTGCCAAATATTAAATCAATTTATAC
TAAAATCATGTAGTANtaacgattaatcactcgtaacaaaggagaaaata
ccgtaattactattttctcctttgttactcgtgattaatcgttaattgca
ctccaaaccatacgattaatACTAAAATCATGTAGTATTTCAGTCAGTTA
CATTAAAATTAAAGTGAAAGATACAAATACAGAATACAACAGAAATTCAT
AATATTAAT
Run BLAST on NCBI

transcript from alignment at sc0002619:18108..19507-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040911 ID=TCONS_00040911|Name=TCONS_00040911|organism=Clytia hemisphaerica|type=transcript|length=1400bp|location=Sequence derived from alignment at sc0002619:18108..19507- (Clytia hemisphaerica)
CAAGCGTGGCTCCAGCAAATGTGAATTTACAAAAAGTGTAATACGAGCGT
AATATCTCTCTCTTAAAATTTTATATGTGGTGTGATTGGAAGACTTTTGA
AAATGGTAAGAATATTTTTTTTTAGTTTTCCTTTATGATTTCAAAATTTG
TATACATATTAGGGACCAAATCTTAAATCTGTTCCCCTAGAGCCCTAGAG
GTAATTCTAGTTAAGCAGTTTCATTATTTTCTTCTTGTTTAATAAGTGTT
ATTGATTCTTTGCCAACCTAATGGCGGGTGCTTATTTTGTTGTGCTTCTG
TCTCATTGATTGTATTGATTAACCTTTCATTCCAATGCCCCAAAATCTCT
AAAACCTTTACCATTAATTAGGATCATGAAATTTTATCCATTCGAGTAAA
TGTAATTCAGTGCTTGCTAGCCTTATGGCGGGTGCTATTTTTGTTGTGCT
TGTCAGCCTTCTGGCGGGTTAACCTTTTACTCGAATGACCTAAAACTTTC
ACAAATAAAATCATCAATTTTTTTCTATTCGAGTAAATTTAATTCAGTGC
TTGCTAGCCTTATGGTGGGTGCTAATTTTATTGTGCTTGTCAGCCTTCTG
GCGGGTTAACCTTTTACTCGAATGACCTAAAACTTATACAAATAAAATCA
TCATCAATTTTTTTTCCATTTGTTGTTTGTAAAATACGTAAGACATATTT
GTATATTTTTCGTCCTTGCTTCAATTAAGATCAGGGTTACAAAAACTGAA
GTTTCTTTGTCGTTCTCTCTTTTCCTTTTTTCAGGACAACCGATGGTAAC
TGGGCGTAGCTGACAGAAAAGAACGTGACGATCATAGAACAGATAACGCC
AAAAAAGCATCCAAGCTACATTAAGTTACCCACATTCAAAGCAGGTAAAA
ACTACTTTTGCCGTGCACTTTCGAATCTTTGGTGTATTTTTATCTGATTA
ATTTTACTTTGTTTATAGATTTCCCGCTTATCTCTATCGTATTAGCTTTA
GTGGCTCTCGTTTCTACTCATAGGTCAATCCAGGTTCCAAAACAAGTAAA
TTTTAATATGCTCATTTTGATTGTTTTTCAGATTGACGAGGCTAAAGAGA
TGAAAGCTTTTTGTAACTATCAATTGACCGATTTTAACAATTACTGTTGA
TGACGTGGAGTAGAGCTGCCAAATATTAAATCAATTTATACTAAAATCAT
GTAGTANTAACGATTAATCACTCGTAACAAAGGAGAAAATACCGTAATTA
CTATTTTCTCCTTTGTTACTCGTGATTAATCGTTAATTGCACTCCAAACC
ATACGATTAATACTAAAATCATGTAGTATTTCAGTCAGTTACATTAAAAT
TAAAGTGAAAGATACAAATACAGAATACAACAGAAATTCATAATATTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024966XLOC_024966Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040911-exon-sc0002619-1575043694:18618..19507TCONS_00040911-exon-sc0002619-1575043694:18618..19507Clytia hemisphaericaexon
TCONS_00040911-exon-sc0002619-1575043694:18108..18426TCONS_00040911-exon-sc0002619-1575043694:18108..18426Clytia hemisphaericaexon
TCONS_00040911-exon-sc0002619-1510915933:18618..19507TCONS_00040911-exon-sc0002619-1510915933:18618..19507Clytia hemisphaericaexon
TCONS_00040911-exon-sc0002619-1510915933:18108..18426TCONS_00040911-exon-sc0002619-1510915933:18108..18426Clytia hemisphaericaexon
TCONS_00040911-exon-sc0002619-1491911889:18618..19507TCONS_00040911-exon-sc0002619-1491911889:18618..19507Clytia hemisphaericaexon
TCONS_00040911-exon-sc0002619-1491911889:18108..18426TCONS_00040911-exon-sc0002619-1491911889:18108..18426Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002619supercontigsc0002619:18108..19507 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0987761	0.198362	0	0.0692756	0.0728985	0.0703991	0.106373	0.514203	0.509594	1.67051	1.37206	1.81415	1.51825	1.56219	0.711365	1.63844	2.18352	0.395109	0.731856	2.55592	1.75192	0.2456	0.865093	0.46589	0.965037	0.785232	0.577727	1.22213	2.26469
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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