TCONS_00040904 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040904
Unique NameTCONS_00040904
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length109

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040904 ID=TCONS_00040904|Name=TCONS_00040904|organism=Clytia hemisphaerica|type=transcript|length=109bp
TATATCTAATCAGACAAACACCTGTATGTAAAAAGTTCTGGTGTTTTTCC
CATGGCACTTCGGTGGCAAGATTGACAATCATGATCAAAGGGGCGTTGAC
AAAGGGAGG
Run BLAST on NCBI

transcript from alignment at sc0002618:6876..7567-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040904 ID=TCONS_00040904|Name=TCONS_00040904|organism=Clytia hemisphaerica|type=transcript|length=692bp|location=Sequence derived from alignment at sc0002618:6876..7567- (Clytia hemisphaerica)
TATATCTAATCAGACAAACACCTGTATGTAAAAAGTTCTGGTGTTTTTCC
CATGGCACTTCGGTGGCAAGGTAACTATTGTTGTTTGTTTCCTTTACTAA
TGCGACCTTCAGAGCTTTAGCGTGGTCGGAGAAAATTCTGAATCTGAATA
TCAGGTGATTTGCTTCCAGAATAGATCAAGGACTCGCGAAGATGAAAAAT
GGCTGCTTGTCCCACGCTCGTTATGTTTCTCTTTTTTGCCTAGAGTTAAT
AGGATTGGCGGAATTACACCCAAAAGGTTCCCAAGAGTTTTTTTTAGAAT
CTGTGTTGTTTAAATATCGGTCGGTACTTTGTTATGATTTTATTGAGAAT
AGTTCGATTTATTAAACCTTGATTTGATTTCCAACAGTCAAAATGGTGCT
TTTTAATAGGTTAGAAAAAAGTAGAGTAAAACTCAATTTTTGATAATCAT
CTGCGACCCAATTATTTAGGAAAGCGAAAAATAAATTGAAAATACCGATT
TTATTTTTTCATAGAATATTGAAATTTGTTGGAATATATTCTTCCTATTT
ATTTGACTTCAATTTCTTGACTACTGTAAAGAGTATTTTGAGCCCCCTAG
GAAATTTAAGGCGCATCGTTTTAAAAGTATCATATTTTTGTCTGTATTTA
AAGATTGACAATCATGATCAAAGGGGCGTTGACAAAGGGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024963XLOC_024963Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040904-exon-sc0002618-1575043694:7498..7567TCONS_00040904-exon-sc0002618-1575043694:7498..7567Clytia hemisphaericaexon
TCONS_00040904-exon-sc0002618-1575043694:6876..6914TCONS_00040904-exon-sc0002618-1575043694:6876..6914Clytia hemisphaericaexon
TCONS_00040904-exon-sc0002618-1510915933:7498..7567TCONS_00040904-exon-sc0002618-1510915933:7498..7567Clytia hemisphaericaexon
TCONS_00040904-exon-sc0002618-1510915933:6876..6914TCONS_00040904-exon-sc0002618-1510915933:6876..6914Clytia hemisphaericaexon
TCONS_00040904-exon-sc0002618-1491911889:7498..7567TCONS_00040904-exon-sc0002618-1491911889:7498..7567Clytia hemisphaericaexon
TCONS_00040904-exon-sc0002618-1491911889:6876..6914TCONS_00040904-exon-sc0002618-1491911889:6876..6914Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002618supercontigsc0002618:6876..7567 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040904 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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