TCONS_00040894 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040894
Unique NameTCONS_00040894
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length967

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040894 ID=TCONS_00040894|Name=TCONS_00040894|organism=Clytia hemisphaerica|type=transcript|length=967bp
TAAAGGTTCGGAAACACAAGACCTTTTACAAGCATGGTTATGCTCATGTT
GCGATTTCCAACGAACTGTTTCAGCTGCTCAAGTTGTACGTTGACAAAGT
CCGTCCCACATTCAGCCGTCCTGATTCCGAAAACGTATTTATCAGCTGTA
CCGGGCGAGGCATGGAGTCTGGTGCCGTCAGCCGGAGGATTGACAAACTA
TGGAGAGAGTCGGGTGTGTATGGGGATAATACACCACCCAAGAAAAACTT
GGATGGTAACATCATCAGAAAATCAATGACATCAATGGTGCATGAAAATA
ACGACGAGGGAGAGAAACAAGCAGTGGCTGATTTGCTTGCTCATCGCAAA
ACCACGGCTGAAAATATATACCGTCAAAAGAAGATGGTTGATCAAGCCGT
AAAGGCCGCGGGAATTATCGAGAGAGTTTCCCACAAGAGaaAAACTGATC
AAGTGGACTTTGCAACAACGTCAAAAACGAGTGAAGTTAAGCCACCATCT
TCTCAAACGGAAGAAGTTACGCCCCCATCTTTTCAAACGAAAGAAATTAC
GCCCCCATCTTCTCAAACGGAAGAAGTTTCGCCCCCATCTTTTCAAACGA
AAGAAATTACGCCCCCATCTTTTCAAACGGAagaaattacaaagaaaacg
aGTGAAGTTCCGCCACCATCTTCTAAAACGgaagaaattacaaaaaaggA
TGACGTTGAAGAAGACACTTATCCAGAAAAAGAAGTTAGCGAAATGAAAC
GTAGTCGAACCGTTCCTTCCGGAAAAGGGAAAACGAAATCATTTTCTACT
GAACAAACTGATTTATTGTATAAGATCACGAAAAAGATATATTTGGAGAA
TCTATCCATTAACGATGAAACAGCCAGGGTTGTCCTTGAGGAATCATCCG
AGGGGGAACAGTTTCTGAAAGATTATACGCTATATACCCTCGTGAATAAG
TTGAAATATGGACGAAg
Run BLAST on NCBI

transcript from alignment at sc0002616:17826..19104-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040894 ID=TCONS_00040894|Name=TCONS_00040894|organism=Clytia hemisphaerica|type=transcript|length=1279bp|location=Sequence derived from alignment at sc0002616:17826..19104- (Clytia hemisphaerica)
TAAAGGTTCGGAAACACAAGACCTTTTACAAGCATGGTTATGCTCATGTT
GCGATTTCCAACGAACTGTTTCAGCTGCTCAAGTTGTACGTTGACAAAGT
CCGTCCCACATTCAGCCGTCCTGATTCCGAAAACGTATTTATCAGCTGTA
CCGGGCGAGGCATGGAGTCTGGTGCCGTCAGCCGGAGGATTGACAAACTA
TGGAGAGAGTCGGGTGTGTATGGGGATAATACACCACCCAAGAAAAACTT
GGATGGTAACATCATCAGAAAATCAATGACATCAATGGTGCATGAAAATA
ACGACGAGGGAGAGAAACAAGCAGTGGCTGATTTGCTTGCTCATCGCAAA
ACCACGGCTGAAAATATATACCGTCAAAAGAAGATGGTTGATCAAGCCGT
AAAGGCCGCGGGAATTATCGAGAGAGTTTCCCACAAGAGGTAAATGCTTT
CATTGGTCTCATAAGGAACTTTCACGTTTGTGGATTCAGTGAAAACTTAT
TCTGTGAAAAACATTACAGTATTTGTAGGTATTTGAAATATCTTTCTGGG
ATTTGCGAGGAAAACGCGTGAGATTGCTGAAATTAAATCCACGTGAAATT
TTTCAAGATTTTTTTCAGATTTTTGGCTCCAAATAGTACGTTTAAACATA
AGCTACATTTGTTTAGACGTACTATTTAGATGGTCCCGTTGGCAGCGTTG
GGGTGGTTACCGAATCAGTCCAGTTTGCTTATCTCTATTTTTTAACCTTA
GAAAAACTGATCAAGTGGACTTTGCAACAACGTCAAAAACGAGTGAAGTT
AAGCCACCATCTTCTCAAACGGAAGAAGTTACGCCCCCATCTTTTCAAAC
GAAAGAAATTACGCCCCCATCTTCTCAAACGGAAGAAGTTTCGCCCCCAT
CTTTTCAAACGAAAGAAATTACGCCCCCATCTTTTCAAACGGAAGAAATT
ACAAAGAAAACGAGTGAAGTTCCGCCACCATCTTCTAAAACGGAAGAAAT
TACAAAAAAGGATGACGTTGAAGAAGACACTTATCCAGAAAAAGAAGTTA
GCGAAATGAAACGTAGTCGAACCGTTCCTTCCGGAAAAGGGAAAACGAAA
TCATTTTCTACTGAACAAACTGATTTATTGTATAAGATCACGAAAAAGAT
ATATTTGGAGAATCTATCCATTAACGATGAAACAGCCAGGGTTGTCCTTG
AGGAATCATCCGAGGGGGAACAGTTTCTGAAAGATTATACGCTATATACC
CTCGTGAATAAGTTGAAATATGGACGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024954XLOC_024954Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040894-exon-sc0002616-1575043694:18666..19104TCONS_00040894-exon-sc0002616-1575043694:18666..19104Clytia hemisphaericaexon
TCONS_00040894-exon-sc0002616-1575043694:17826..18353TCONS_00040894-exon-sc0002616-1575043694:17826..18353Clytia hemisphaericaexon
TCONS_00040894-exon-sc0002616-1510915933:18666..19104TCONS_00040894-exon-sc0002616-1510915933:18666..19104Clytia hemisphaericaexon
TCONS_00040894-exon-sc0002616-1510915933:17826..18353TCONS_00040894-exon-sc0002616-1510915933:17826..18353Clytia hemisphaericaexon
TCONS_00040894-exon-sc0002616-1491911889:18666..19104TCONS_00040894-exon-sc0002616-1491911889:18666..19104Clytia hemisphaericaexon
TCONS_00040894-exon-sc0002616-1491911889:17826..18353TCONS_00040894-exon-sc0002616-1491911889:17826..18353Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002616supercontigsc0002616:17826..19104 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0456417	0.0529944	0	0.310699	0.0929764	0.439775	1.97949	2.55317	1.47222	4.50401	1.95878	1.01821	1.68875	0.0386795	0.216501	0.458317	0.332921	0	0.156192	0.0187288	0	0	0.0108503	1.9906	0.843379	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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