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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040893 ID=TCONS_00040893|Name=TCONS_00040893|organism=Clytia hemisphaerica|type=transcript|length=423bp
TCCCTCAAGAAATGAATTTCTAACCGTTCGTGACTATCTCTTTGCAAGAA
TTGCTTTGGCTAATGCCCACCGAACTGGGGTATGCGCAAACATGACGATG
AAGGAATACGAAAACGTACTCACCAAGGACGATCACAAGGTAATAAAGGT
TCGAAAACACAAAACCTTTGACAAGGATGGTTATGCTCATGTTGCGATTT
CCAACGAACTGTTTCAGCTTCTCAAGTTGTACGTTGACAAAGTCCGTCCC
ACATTCAGCCGTCCTGATTCCGAAAACGTATTTATTAGCTGTACCGGGCG
CAGCATGGAATCCAGTGCTATTAGTCAGATAATCAATCGGACTCTCGGCG
GAgctcattaaatttttttttgtattactatagtaacattttccaaaaaa
aatattttccatcaaAGACACAT Run BLAST on NCBI transcript from alignment at sc0002616:16290..19708- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040893 ID=TCONS_00040893|Name=TCONS_00040893|organism=Clytia hemisphaerica|type=transcript|length=3419bp|location=Sequence derived from alignment at sc0002616:16290..19708- (Clytia hemisphaerica)
TCCCTCAAGAAATGAATTTCTAACCGTTCGTGACTATCTCTTTGCAAGAA
TTGCTTTGGCTAATGCCCACCGGTAAGCACATTTTTTATTTTAAGATGTC
ATTTTGGCGGTATCAGGATGTTTTGACCAAAACCTGCCCTCGGACAATGA
AATGTTCTCGTATGCCTTACATGTACGGCGCCGTTTGGTGATTTTTACTT
CTTTCCAACCCCGTCGATTTTATCATATCCTCTATTTGTTCATTTTGGAA
ATAATTTTAGCTGTTAAATAAAAGTTCCCTGTTTTCACAGGTTTTAATAT
TCATCTTATTTTATTGTGGATAGAGGTTTTCTATATTTTGTTAAATATGT
AGCATCTGTCATTATGAAAACAAACGTTCGATTTTTGTAAATGATCGTAT
TGACAGATTCAAAGGTTTGCCTTCATAATGGCGGAATATACGTAATTTAA
CAAAACGAAATGAATCAACTGAAAAATCTTTCAGAAGAATTGTTGCTAAC
CCCAAGCCACCTTGATATTTGATTTCGTTTTAGAACTGGAGTATGCGCAA
ACATGACGATGAAGGAATACGAAAACGTACTCACCAAGGACGATCACAAG
GTGATAAAGGTTCGGAAACACAAGACCTTTTACAAGCATGGTTATGCTCA
TGTTGCGATTTCCAACGAACTGTTTCAGCTGCTCAAGTTGTACGTTGACA
AAGTCCGTCCCACATTCAGCCGTCCTGATTCCGAAAACGTATTTATCAGC
TGTACCGGGCGAGGCATGGAGTCTGGTGCCGTCAGCCGGAGGATTGACAA
ACTATGGAGAGAGTCGGGTGTGTATGGGGATAATACACCACCCAAGAAAA
ACTTGGATGGTAACATCATCAGAAAATCAATGACATCAATGGTGCATGAA
AATAACGACGAGGGAGAGAAACAAGCAGTGGCTGATTTGCTTGCTCATCG
CAAAACCACGGCTGAAAATATATACCGTCAAAAGAAGATGGTTGATCAAG
CCGTAAAGGCCGCGGGAATTATCGAGAGAGTTTCCCACAAGAGGTAAATG
CTTTCATTGGTCTCATAAGGAACTTTCACGTTTGTGGATTCAGTGAAAAC
TTATTCTGTGAAAAACATTACAGTATTTGTAGGTATTTGAAATATCTTTC
TGGGATTTGCGAGGAAAACGCGTGAGATTGCTGAAATTAAATCCACGTGA
AATTTTTCAAGATTTTTTTCAGATTTTTGGCTCCAAATAGTACGTTTAAA
CATAAGCTACATTTGTTTAGACGTACTATTTAGATGGTCCCGTTGGCAGC
GTTGGGGTGGTTACCGAATCAGTCCAGTTTGCTTATCTCTATTTTTTAAC
CTTAGAAAAACTGATCAAGTGGACTTTGCAACAACGTCAAAAACGAGTGA
AGTTAAGCCACCATCTTCTCAAACGGAAGAAGTTACGCCCCCATCTTTTC
AAACGAAAGAAATTACGCCCCCATCTTCTCAAACGGAAGAAGTTTCGCCC
CCATCTTTTCAAACGAAAGAAATTACGCCCCCATCTTTTCAAACGGAAGA
AATTACAAAGAAAACGAGTGAAGTTCCGCCACCATCTTCTAAAACGGAAG
AAATTACAAAAAAGGATGACGTTGAAGAAGACACTTATCCAGAAAAAGAA
GTTAGCGAAATGAAACGTAGTCGAACCGTTCCTTCCGGAAAAGGGAAAAC
GAAATCATTTTCTACTGAACAAACTGATTTATTGTATAAGATCACGAAAA
AGATATATTTGGAGAATCTATCCATTAACGATGAAACAGCCAGGGTTGTC
CTTGAGGAATCATCCGAGGGGGAACAGTTTCTGAAAGATTATACGCTATA
TACCCTCGTGAATAAGTTGAAATATGGACGAAGACTTTATAAAAATAATA
AACTGTCTTTTTAGATGAACCTTCTTTGTATCACTAACTTGAATGCATGA
AGTCATCGCGGACCTCGTTTTAAAATTATAAAATTATTTTTTGTCTTTCG
ATTTTGTCAAACAAACTTTCACACACCCTGTTCTCACAGACCCACTGGAA
AAATTGGCCAAAATATCGTCCCCGGTGGAAAACTATACTCTAATTTTTGT
TCTCACTGAAAATTATCAGATAAGCAAATCCCACTGCAGAGTATTGAGCT
ATTTTTTCATCCACCCCGAGTTTTCTGGCTAGAAAACATTGGAATCATAA
TCCACACCTTTAAAAACACGAGAAAATCTATCCCCATCGAGCTCTGTTCC
GTTATTTTTATCCCCACTTGCTGATAAAATCCCACCGGGTCTGTGAGAAG
GGGGTGTTTTCAAAAATAGAAACTTCAATCATTATTCATTGATCATTGGA
TTTTTCTCACCTGAAGCGTGGAGTCTTTTTGTCATTTGTTAGGACGTATA
GTTTTTTTATAAGTTTGTAAAGGTATTAGTAACAATTCAACTTTTTATAC
TTTATGTACAGTTTTAGATATTTGTACTATTTCTATATATCTATGGTGTC
TCGCAAAAATATTCATATGATTTGTTTAGCTCTAGAGCAAACGCCCCACT
CCCACCCATCGAATTTTTGTTAAAGAAGAACTCTGTCAATTAAACGACTT
TTGATATTTTAGATTAAGAACAATAAAATCAAGAAAAACATGGAATCTTC
ACAAGCAAGAAAGGTCATTGAAATTTTGGAAAACATAAATGGTGATCCAT
CTCGAGGCGAGCTTAATATTGTCAGGAATTTCTTGCTGGCAAGAATTACC
TTCGAAAATCCCAATAGGTAAGTGCTCTTCTTTCGTCTGGCTCTTCCTAG
AAAATGATGTAAGCGTTTATTTTTAGTTTATTTTCACTGACTTGATGCCC
CTGTACCAGTATCAGACCCACTTCACTTCTTAGGACAAGTTTCTTTCGCA
TTATTACGCCCACTATCTTTCAAATACATTTATCGACTTTTTGCATAGTT
CGATTTAGACGTTTATTTATTTTTTGTTCATTTATATCTCCATAATAAGA
AAAAAAGACGGGAATTTATTTTTGATCCGCTACGATACTAATAAGCGTCA
ATTTTGATTTCGTTTTAGAACTGGGGTATGCGCAAACATGACGATGAAGG
AATACGAAAACGTACTCACCAAGGACGATCACAAGGTAATAAAGGTTCGA
AAACACAAAACCTTTGACAAGGATGGTTATGCTCATGTTGCGATTTCCAA
CGAACTGTTTCAGCTTCTCAAGTTGTACGTTGACAAAGTCCGTCCCACAT
TCAGCCGTCCTGATTCCGAAAACGTATTTATTAGCTGTACCGGGCGCAGC
ATGGAATCCAGTGCTATTAGTCAGATAATCAATCGGACTCTCGGCGGAGC
TCATTAAATTTTTTTTTGTATTACTATAGTAACATTTTCCAAAAAAAATA
TTTTCCATCAAAGACACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040893-exon-sc0002616-1575043694:19637..19708 | TCONS_00040893-exon-sc0002616-1575043694:19637..19708 | Clytia hemisphaerica | exon |
| TCONS_00040893-exon-sc0002616-1575043694:16290..16640 | TCONS_00040893-exon-sc0002616-1575043694:16290..16640 | Clytia hemisphaerica | exon |
| TCONS_00040893-exon-sc0002616-1510915933:19637..19708 | TCONS_00040893-exon-sc0002616-1510915933:19637..19708 | Clytia hemisphaerica | exon |
| TCONS_00040893-exon-sc0002616-1510915933:16290..16640 | TCONS_00040893-exon-sc0002616-1510915933:16290..16640 | Clytia hemisphaerica | exon |
| TCONS_00040893-exon-sc0002616-1491911889:19637..19708 | TCONS_00040893-exon-sc0002616-1491911889:19637..19708 | Clytia hemisphaerica | exon |
| TCONS_00040893-exon-sc0002616-1491911889:16290..16640 | TCONS_00040893-exon-sc0002616-1491911889:16290..16640 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002616 | supercontig | sc0002616:16290..19708 - |
Blast
The following BLAST results are available for this feature:
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