TCONS_00040889 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040889
Unique NameTCONS_00040889
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2374

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040889 ID=TCONS_00040889|Name=TCONS_00040889|organism=Clytia hemisphaerica|type=transcript|length=2374bp
aaagggttaagcaCACATTTATAAAATTGTAACACGTTATTTTTCTCTCC
AGAAACGACAAAAAAGACCTTGTCCGGTGTGTAAAGCTCCATTGACTGGC
CTTCCAAGGCATATGAGGGATGTCCATGAATGGAGCTGGAAAAAGTCTGC
CAAAGTCAACAGTCTCTTTAAATCAAGGCAACCGTATACAAAGAAGGACG
GTCAATCAACAAGCGAACAGTCTGCGAAACGAAAAGGGAAACGCTGCCCC
ATGGAAGGATGCTTTTTCGTCGGTATTCAGGTGGGGAGACACCTCCGTAA
GGAACACTGTATGAAATTTGATGATGAAAATTATAAGGATGCACTCAAGG
CAGCCCGTGTCCATGAGCCTTTGACGTCCGAAAACATCCAAAAGAATCGC
CGGGCTGTTGCCAGAGAGTTTGAACTTGCTGAGAACATCCAGGAATATGA
AAAAGAAGTTGAGAGTGGTACCGGAAGGAGGTCTGAAGAGAAAGTTATTG
ATTATGCAATGATTATGTTCGAAAGGTACTTGATTTCGGTTGAAGGAAAT
TTCCGTGATAAGAGATCAGCTAAACAATGCGTCCAAGAAGTGAAAACGGT
TGCTCTCCATCTTGGATCTCTTGTTGCCCTATTCGACAAAAAGAAGGTCA
GAGATGGGTTCTTCCAATCGTACTTAGACCCAAAGTCCAAACCAAGCACA
TCGAAACACTACCTAACGTCATTGATTTCGTTCATGGGCTTCGTTATCAC
TGAAGGTCTCGAGAGTCTCGCAGACATCGTAAATCAAGACGACGTGGTTG
CCATGAAACTTAGACTTGGTAATTGGAGGAAGGCTTATGGGAAAAAGCAA
GATGTTTTACGTTGGGAGAGGGACGACGAAATCAACGAAGTTCTTGTGAC
ACTCGATCAGAttaaaacttttgaagaaagcGAACAAGCTATCAACGCAA
TCACGATCTTGGAACAAGAGACTGATCTTCTTCCCTCAAGAAATGAATTT
CTAACCGTCCGTGACTATCTCTTTGCAAGAATTGCTTTGGCTAATGCCCA
CCGAACTGGGGTATGCGCAAACATGACGATGAAGGAATACGAAAACGTAC
TCACCAAGGACGATCACAAGGTGATAAAGGTTCGGAAACACAAAACGTTT
TACAAGCATGGTTATGCTCATGTTGCGATTTCCAACGAACTGTTTCAGCT
GCTCAAGTTGTACGTTGACAAAGTTCGTCCCACATTCAGCCGTCCTGATT
CCGAAAACGTATTTATCAGCTGTACCGGGCGAGGCATGGAGTCTGGTGCC
GTCAGCCGGAGGATTGACAAACTATGGAGAGAGTCGGGTGTGTATGGGGA
TAATACACCACCCAAGAAAAACTTGGATGGTAACATCATCAGAAAATCAA
TGACATCAATGGTGCATGAAAATAACGACGAGGGAGAGAAACAAGCAGTG
GCTGATTTGCTTGCTCATCGCAAAACCACGGCTGAAAATATATACCGTCA
AAAGAAGATGGTTGATCAAGCCGTAAAGGCCGCGGGAATTATCGAGAGAG
TTTCCCACAAGAGaaAAACTGATCAAGTGGACTTTGCAACAACGTCAAAA
ACGAGTGAAGTTAAGCCACCATCTTCTCAAACGGAAGAAGTTACGCCCCC
ATCTTTTCAAACGAAAGAAATTACGCCCCCGTCTTCTCAAACGGAAGAAG
TTTCGCCCCCATCTTTTCAAACGAAAGAAATTACGCCCCCATCTTTTCAA
ACGGAagaaattacaaagaaaacgaGTGAAGTTCCGCCACCATCTTCTAA
AACGgaagaaattacaaaaaaggATGACGTTGAAGAAGACACTTATCCAG
AAAAAGAAGTTAGCGAAATGAAACGTAGTCGAACCGTTCCTTCCGGAAAA
GGGAAAACGAAATCATTTTCTACTGAACAAACTGATTTATTGTATAAGAT
CACGAAAAAGATATATTTGGAGAATCTATCCATTAACGATGAAACAGCCA
GGGTTGTCCTTGAGGAATCATCCGAGGGGGAACAGTTTCTGAAAGATTAT
ACGCTATATACCCTCGTGAATAAGTTGAAATATGGACGAAgactttataa
aaataataaactgTCTTTTTAGATGAACCTTCTTTGTATCACTAACTTGA
ATGCATGAAGTCATCGCGGACCTcgttttaaaattataaaattatttttt
gtctttCGATTTTGTCAAACAAACTTTCACACACCCtgttctcacagacc
cactggaaaaattggccaaaatatcgtccccggtggaaaactatactcta
atttttgttctCACTGAAAAttatcagataagcaaatccccaCTGCAGAG
TATTGAGCTATTTTTTCATCCTCC
Run BLAST on NCBI

protein sequence of TCONS_00040889-protein

>TCONS_00040889-protein ID=TCONS_00040889-protein|Name=TCONS_00040889-protein|organism=Clytia hemisphaerica|type=polypeptide|length=669bp
MRDVHEWSWKKSAKVNSLFKSRQPYTKKDGQSTSEQSAKRKGKRCPMEGC
FFVGIQVGRHLRKEHCMKFDDENYKDALKAARVHEPLTSENIQKNRRAVA
REFELAENIQEYEKEVESGTGRRSEEKVIDYAMIMFERYLISVEGNFRDK
RSAKQCVQEVKTVALHLGSLVALFDKKKVRDGFFQSYLDPKSKPSTSKHY
LTSLISFMGFVITEGLESLADIVNQDDVVAMKLRLGNWRKAYGKKQDVLR
WERDDEINEVLVTLDQIKTFEESEQAINAITILEQETDLLPSRNEFLTVR
DYLFARIALANAHRTGVCANMTMKEYENVLTKDDHKVIKVRKHKTFYKHG
YAHVAISNELFQLLKLYVDKVRPTFSRPDSENVFISCTGRGMESGAVSRR
IDKLWRESGVYGDNTPPKKNLDGNIIRKSMTSMVHENNDEGEKQAVADLL
AHRKTTAENIYRQKKMVDQAVKAAGIIERVSHKRKTDQVDFATTSKTSEV
KPPSSQTEEVTPPSFQTKEITPPSSQTEEVSPPSFQTKEITPPSFQTEEI
TKKTSEVPPPSSKTEEITKKDDVEEDTYPEKEVSEMKRSRTVPSGKGKTK
SFSTEQTDLLYKITKKIYLENLSINDETARVVLEESSEGEQFLKDYTLYT
LVNKLKYGRRLYKNNKLSF
Run BLAST on NCBI

transcript from alignment at sc0002616:970..4116-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040889 ID=TCONS_00040889|Name=TCONS_00040889|organism=Clytia hemisphaerica|type=transcript|length=3147bp|location=Sequence derived from alignment at sc0002616:970..4116- (Clytia hemisphaerica)
AAAGGGTTAAGCACACATTTATAAAATTGTAACACGTTATTTTTCTCTCC
AGAAACGACAAAAAAGACCTTGTCCGGTGTGTAAAGCTCCATTGACTGGC
CTTCCAAGGCATATGAGGGATGTCCATGAATGGAGCTGGAAAAAGTCTGC
CAAAGTCAACAGTCTCTTTAAATCAAGGCAACCGTATACAAAGAAGGACG
GTCAATCAACAAGCGAACAGTCTGCGAAACGAAAAGGGAAACGCTGCCCC
ATGGAAGGATGCTTTTTCGTCGGTATTCAGGTGGGGAGACACCTCCGTAA
GGAACACTGTATGAAATTTGATGATGAAAATTATAAGGATGCACTCAAGG
CAGCCCGTGTCCATGAGCCTTTGACGTCCGAAAACATCCAAAAGAATCGC
CGGGCTGTTGCCAGAGAGTTTGAACTTGCTGAGAACATCCAGGAATATGA
AAAAGAAGTTGAGAGTGGTACCGGAAGGAGGTCTGAAGAGAAAGTTATTG
ATTATGCAATGATTATGTTCGAAAGGTACTTGATTTCGGTTGAAGGAAAT
TTCCGTGATAAGAGATCAGCTAAACAATGCGTCCAAGAAGTGAAAACGGT
TGCTCTCCATCTTGGATCTCTTGTTGCCCTATTCGACAAAAAGAAGGTCA
GAGATGGGTTCTTCCAATCGTACTTAGACCCAAAGTCCAAACCAAGCACA
TCGAAACACTACCTAACGTCATTGATTTCGTTCATGGGCTTCGTTATCAC
TGAAGGTCTCGAGAGTCTCGCAGACATCGTAAATCAAGACGACGTGGTTG
CCATGAAACTTAGACTTGGTAATTGGAGGAAGGCTTATGGGAAAAAGCAA
GATGTTTTACGTTGGGAGAGGGACGACGAAATCAACGAAGTTCTTGTGAC
ACTCGATCAGATTAAAACTTTTGAAGAAAGCGAACAAGCTATCAACGCAA
TCACGATCTTGGAACAAGAGACTGATCTTCTTCCCTCAAGAAATGAATTT
CTAACCGTCCGTGACTATCTCTTTGCAAGAATTGCTTTGGCTAATGCCCA
CCGGTAAGCACATTTTTCATTTTAAGATGTCATTTTGGCGGTATCAGGAT
GTTTTGACCAAAACCTGCCCTCGGACAATGAAATGTTCTCGTATGCCTTA
TATGTACGGCGCCGTCTGGTGATTTTTACTTCTTTCCAACCCCGTCGATT
TTATCATAACCTCCATTTGTTCATTTTGGAAATAATTTTAGCTGTTAAAT
AAAAGTTCCCTGTTTTCACAGGTTTTAATATTCATCTTATTTTATTGTGG
ATAGAGGTTTTCCATATTTTGTTAAATATGTAGCATCTGTCATTATGAAA
ACAAACGTTCGATTTTTGTAAAGGATCGTATTGACAGATTCGAAGGTTTG
CCTTCATAATGGCGGAATATACGTAATTTAACAAAACGAAATGAATCAAC
TGAAAAATCTTTCAGAAGAATTGTTGCTAACCCCAAGCCACCTTGATATT
TGATTTCGTTTTAGAACTGGGGTATGCGCAAACATGACGATGAAGGAATA
CGAAAACGTACTCACCAAGGACGATCACAAGGTGATAAAGGTTCGGAAAC
ACAAAACGTTTTACAAGCATGGTTATGCTCATGTTGCGATTTCCAACGAA
CTGTTTCAGCTGCTCAAGTTGTACGTTGACAAAGTTCGTCCCACATTCAG
CCGTCCTGATTCCGAAAACGTATTTATCAGCTGTACCGGGCGAGGCATGG
AGTCTGGTGCCGTCAGCCGGAGGATTGACAAACTATGGAGAGAGTCGGGT
GTGTATGGGGATAATACACCACCCAAGAAAAACTTGGATGGTAACATCAT
CAGAAAATCAATGACATCAATGGTGCATGAAAATAACGACGAGGGAGAGA
AACAAGCAGTGGCTGATTTGCTTGCTCATCGCAAAACCACGGCTGAAAAT
ATATACCGTCAAAAGAAGATGGTTGATCAAGCCGTAAAGGCCGCGGGAAT
TATCGAGAGAGTTTCCCACAAGAGGTAAATGCTTTCATTGGTCTCATAAG
GAACTTTCACGTTTGTGGATTCAGTGAAAACTTATTCTGTGAAAAACATT
ACAGTATTTGTAGGTATTTGAAATATCTTTCTGGGATTTGCGAGGAAAAC
GCGTGAGATTGCTGAAATTAAATCCACGTGAAATTTTTCAAGATTTTTTT
CAGATTTTTGGCTCCAAATAGTACGTTTAAACATAAGCTACATTTGTTTA
GACGTACTATTTAGATGGTCCCGTTGGCAGCGTTGGGGTGGTTACCGAAT
CAGTCCAGTTTGCTTATCTCTATTTTTTAACCTTAGAAAAACTGATCAAG
TGGACTTTGCAACAACGTCAAAAACGAGTGAAGTTAAGCCACCATCTTCT
CAAACGGAAGAAGTTACGCCCCCATCTTTTCAAACGAAAGAAATTACGCC
CCCGTCTTCTCAAACGGAAGAAGTTTCGCCCCCATCTTTTCAAACGAAAG
AAATTACGCCCCCATCTTTTCAAACGGAAGAAATTACAAAGAAAACGAGT
GAAGTTCCGCCACCATCTTCTAAAACGGAAGAAATTACAAAAAAGGATGA
CGTTGAAGAAGACACTTATCCAGAAAAAGAAGTTAGCGAAATGAAACGTA
GTCGAACCGTTCCTTCCGGAAAAGGGAAAACGAAATCATTTTCTACTGAA
CAAACTGATTTATTGTATAAGATCACGAAAAAGATATATTTGGAGAATCT
ATCCATTAACGATGAAACAGCCAGGGTTGTCCTTGAGGAATCATCCGAGG
GGGAACAGTTTCTGAAAGATTATACGCTATATACCCTCGTGAATAAGTTG
AAATATGGACGAAGACTTTATAAAAATAATAAACTGTCTTTTTAGATGAA
CCTTCTTTGTATCACTAACTTGAATGCATGAAGTCATCGCGGACCTCGTT
TTAAAATTATAAAATTATTTTTTGTCTTTCGATTTTGTCAAACAAACTTT
CACACACCCTGTTCTCACAGACCCACTGGAAAAATTGGCCAAAATATCGT
CCCCGGTGGAAAACTATACTCTAATTTTTGTTCTCACTGAAAATTATCAG
ATAAGCAAATCCCCACTGCAGAGTATTGAGCTATTTTTTCATCCTCC

Coding sequence (CDS) from alignment at sc0002616:970..4116-

>TCONS_00040889 ID=TCONS_00040889|Name=TCONS_00040889|organism=Clytia hemisphaerica|type=CDS|length=6030bp|location=Sequence derived from alignment at sc0002616:970..4116- (Clytia hemisphaerica)
AAAAACTGATCAAGTGGACTTTGCAACAACGTCAAAAACGAGTGAAGTTA
AGCCACCATCTTCTCAAACGGAAGAAGTTACGCCCCCATCTTTTCAAACG
AAAGAAATTACGCCCCCGTCTTCTCAAACGGAAGAAGTTTCGCCCCCATC
TTTTCAAACGAAAGAAATTACGCCCCCATCTTTTCAAACGGAAGAAATTA
CAAAGAAAACGAGTGAAGTTCCGCCACCATCTTCTAAAACGGAAGAAATT
ACAAAAAAGGATGACGTTGAAGAAGACACTTATCCAGAAAAAGAAGTTAG
CGAAATGAAACGTAGTCGAACCGTTCCTTCCGGAAAAGGGAAAACGAAAT
CATTTTCTACTGAACAAACTGATTTATTGTATAAGATCACGAAAAAGATA
TATTTGGAGAATCTATCCATTAACGATGAAACAGCCAGGGTTGTCCTTGA
GGAATCATCCGAGGGGGAACAGTTTCTGAAAGATTATACGCTATATACCC
TCGTGAATAAGTTGAAATATGGACGAAGACTTTATAAAAATAATAAACTG
TCTTTTTAGAACTGGGGTATGCGCAAACATGACGATGAAGGAATACGAAA
ACGTACTCACCAAGGACGATCACAAGGTGATAAAGGTTCGGAAACACAAA
ACGTTTTACAAGCATGGTTATGCTCATGTTGCGATTTCCAACGAACTGTT
TCAGCTGCTCAAGTTGTACGTTGACAAAGTTCGTCCCACATTCAGCCGTC
CTGATTCCGAAAACGTATTTATCAGCTGTACCGGGCGAGGCATGGAGTCT
GGTGCCGTCAGCCGGAGGATTGACAAACTATGGAGAGAGTCGGGTGTGTA
TGGGGATAATACACCACCCAAGAAAAACTTGGATGGTAACATCATCAGAA
AATCAATGACATCAATGGTGCATGAAAATAACGACGAGGGAGAGAAACAA
GCAGTGGCTGATTTGCTTGCTCATCGCAAAACCACGGCTGAAAATATATA
CCGTCAAAAGAAGATGGTTGATCAAGCCGTAAAGGCCGCGGGAATTATCG
AGAGAGTTTCCCACAAGAGATGAGGGATGTCCATGAATGGAGCTGGAAAA
AGTCTGCCAAAGTCAACAGTCTCTTTAAATCAAGGCAACCGTATACAAAG
AAGGACGGTCAATCAACAAGCGAACAGTCTGCGAAACGAAAAGGGAAACG
CTGCCCCATGGAAGGATGCTTTTTCGTCGGTATTCAGGTGGGGAGACACC
TCCGTAAGGAACACTGTATGAAATTTGATGATGAAAATTATAAGGATGCA
CTCAAGGCAGCCCGTGTCCATGAGCCTTTGACGTCCGAAAACATCCAAAA
GAATCGCCGGGCTGTTGCCAGAGAGTTTGAACTTGCTGAGAACATCCAGG
AATATGAAAAAGAAGTTGAGAGTGGTACCGGAAGGAGGTCTGAAGAGAAA
GTTATTGATTATGCAATGATTATGTTCGAAAGGTACTTGATTTCGGTTGA
AGGAAATTTCCGTGATAAGAGATCAGCTAAACAATGCGTCCAAGAAGTGA
AAACGGTTGCTCTCCATCTTGGATCTCTTGTTGCCCTATTCGACAAAAAG
AAGGTCAGAGATGGGTTCTTCCAATCGTACTTAGACCCAAAGTCCAAACC
AAGCACATCGAAACACTACCTAACGTCATTGATTTCGTTCATGGGCTTCG
TTATCACTGAAGGTCTCGAGAGTCTCGCAGACATCGTAAATCAAGACGAC
GTGGTTGCCATGAAACTTAGACTTGGTAATTGGAGGAAGGCTTATGGGAA
AAAGCAAGATGTTTTACGTTGGGAGAGGGACGACGAAATCAACGAAGTTC
TTGTGACACTCGATCAGATTAAAACTTTTGAAGAAAGCGAACAAGCTATC
AACGCAATCACGATCTTGGAACAAGAGACTGATCTTCTTCCCTCAAGAAA
TGAATTTCTAACCGTCCGTGACTATCTCTTTGCAAGAATTGCTTTGGCTA
ATGCCCACCGAAAAACTGATCAAGTGGACTTTGCAACAACGTCAAAAACG
AGTGAAGTTAAGCCACCATCTTCTCAAACGGAAGAAGTTACGCCCCCATC
TTTTCAAACGAAAGAAATTACGCCCCCGTCTTCTCAAACGGAAGAAGTTT
CGCCCCCATCTTTTCAAACGAAAGAAATTACGCCCCCATCTTTTCAAACG
GAAGAAATTACAAAGAAAACGAGTGAAGTTCCGCCACCATCTTCTAAAAC
GGAAGAAATTACAAAAAAGGATGACGTTGAAGAAGACACTTATCCAGAAA
AAGAAGTTAGCGAAATGAAACGTAGTCGAACCGTTCCTTCCGGAAAAGGG
AAAACGAAATCATTTTCTACTGAACAAACTGATTTATTGTATAAGATCAC
GAAAAAGATATATTTGGAGAATCTATCCATTAACGATGAAACAGCCAGGG
TTGTCCTTGAGGAATCATCCGAGGGGGAACAGTTTCTGAAAGATTATACG
CTATATACCCTCGTGAATAAGTTGAAATATGGACGAAGACTTTATAAAAA
TAATAAACTGTCTTTTTAGAACTGGGGTATGCGCAAACATGACGATGAAG
GAATACGAAAACGTACTCACCAAGGACGATCACAAGGTGATAAAGGTTCG
GAAACACAAAACGTTTTACAAGCATGGTTATGCTCATGTTGCGATTTCCA
ACGAACTGTTTCAGCTGCTCAAGTTGTACGTTGACAAAGTTCGTCCCACA
TTCAGCCGTCCTGATTCCGAAAACGTATTTATCAGCTGTACCGGGCGAGG
CATGGAGTCTGGTGCCGTCAGCCGGAGGATTGACAAACTATGGAGAGAGT
CGGGTGTGTATGGGGATAATACACCACCCAAGAAAAACTTGGATGGTAAC
ATCATCAGAAAATCAATGACATCAATGGTGCATGAAAATAACGACGAGGG
AGAGAAACAAGCAGTGGCTGATTTGCTTGCTCATCGCAAAACCACGGCTG
AAAATATATACCGTCAAAAGAAGATGGTTGATCAAGCCGTAAAGGCCGCG
GGAATTATCGAGAGAGTTTCCCACAAGAGATGAGGGATGTCCATGAATGG
AGCTGGAAAAAGTCTGCCAAAGTCAACAGTCTCTTTAAATCAAGGCAACC
GTATACAAAGAAGGACGGTCAATCAACAAGCGAACAGTCTGCGAAACGAA
AAGGGAAACGCTGCCCCATGGAAGGATGCTTTTTCGTCGGTATTCAGGTG
GGGAGACACCTCCGTAAGGAACACTGTATGAAATTTGATGATGAAAATTA
TAAGGATGCACTCAAGGCAGCCCGTGTCCATGAGCCTTTGACGTCCGAAA
ACATCCAAAAGAATCGCCGGGCTGTTGCCAGAGAGTTTGAACTTGCTGAG
AACATCCAGGAATATGAAAAAGAAGTTGAGAGTGGTACCGGAAGGAGGTC
TGAAGAGAAAGTTATTGATTATGCAATGATTATGTTCGAAAGGTACTTGA
TTTCGGTTGAAGGAAATTTCCGTGATAAGAGATCAGCTAAACAATGCGTC
CAAGAAGTGAAAACGGTTGCTCTCCATCTTGGATCTCTTGTTGCCCTATT
CGACAAAAAGAAGGTCAGAGATGGGTTCTTCCAATCGTACTTAGACCCAA
AGTCCAAACCAAGCACATCGAAACACTACCTAACGTCATTGATTTCGTTC
ATGGGCTTCGTTATCACTGAAGGTCTCGAGAGTCTCGCAGACATCGTAAA
TCAAGACGACGTGGTTGCCATGAAACTTAGACTTGGTAATTGGAGGAAGG
CTTATGGGAAAAAGCAAGATGTTTTACGTTGGGAGAGGGACGACGAAATC
AACGAAGTTCTTGTGACACTCGATCAGATTAAAACTTTTGAAGAAAGCGA
ACAAGCTATCAACGCAATCACGATCTTGGAACAAGAGACTGATCTTCTTC
CCTCAAGAAATGAATTTCTAACCGTCCGTGACTATCTCTTTGCAAGAATT
GCTTTGGCTAATGCCCACCGAAAAACTGATCAAGTGGACTTTGCAACAAC
GTCAAAAACGAGTGAAGTTAAGCCACCATCTTCTCAAACGGAAGAAGTTA
CGCCCCCATCTTTTCAAACGAAAGAAATTACGCCCCCGTCTTCTCAAACG
GAAGAAGTTTCGCCCCCATCTTTTCAAACGAAAGAAATTACGCCCCCATC
TTTTCAAACGGAAGAAATTACAAAGAAAACGAGTGAAGTTCCGCCACCAT
CTTCTAAAACGGAAGAAATTACAAAAAAGGATGACGTTGAAGAAGACACT
TATCCAGAAAAAGAAGTTAGCGAAATGAAACGTAGTCGAACCGTTCCTTC
CGGAAAAGGGAAAACGAAATCATTTTCTACTGAACAAACTGATTTATTGT
ATAAGATCACGAAAAAGATATATTTGGAGAATCTATCCATTAACGATGAA
ACAGCCAGGGTTGTCCTTGAGGAATCATCCGAGGGGGAACAGTTTCTGAA
AGATTATACGCTATATACCCTCGTGAATAAGTTGAAATATGGACGAAGAC
TTTATAAAAATAATAAACTGTCTTTTTAGAACTGGGGTATGCGCAAACAT
GACGATGAAGGAATACGAAAACGTACTCACCAAGGACGATCACAAGGTGA
TAAAGGTTCGGAAACACAAAACGTTTTACAAGCATGGTTATGCTCATGTT
GCGATTTCCAACGAACTGTTTCAGCTGCTCAAGTTGTACGTTGACAAAGT
TCGTCCCACATTCAGCCGTCCTGATTCCGAAAACGTATTTATCAGCTGTA
CCGGGCGAGGCATGGAGTCTGGTGCCGTCAGCCGGAGGATTGACAAACTA
TGGAGAGAGTCGGGTGTGTATGGGGATAATACACCACCCAAGAAAAACTT
GGATGGTAACATCATCAGAAAATCAATGACATCAATGGTGCATGAAAATA
ACGACGAGGGAGAGAAACAAGCAGTGGCTGATTTGCTTGCTCATCGCAAA
ACCACGGCTGAAAATATATACCGTCAAAAGAAGATGGTTGATCAAGCCGT
AAAGGCCGCGGGAATTATCGAGAGAGTTTCCCACAAGAGATGAGGGATGT
CCATGAATGGAGCTGGAAAAAGTCTGCCAAAGTCAACAGTCTCTTTAAAT
CAAGGCAACCGTATACAAAGAAGGACGGTCAATCAACAAGCGAACAGTCT
GCGAAACGAAAAGGGAAACGCTGCCCCATGGAAGGATGCTTTTTCGTCGG
TATTCAGGTGGGGAGACACCTCCGTAAGGAACACTGTATGAAATTTGATG
ATGAAAATTATAAGGATGCACTCAAGGCAGCCCGTGTCCATGAGCCTTTG
ACGTCCGAAAACATCCAAAAGAATCGCCGGGCTGTTGCCAGAGAGTTTGA
ACTTGCTGAGAACATCCAGGAATATGAAAAAGAAGTTGAGAGTGGTACCG
GAAGGAGGTCTGAAGAGAAAGTTATTGATTATGCAATGATTATGTTCGAA
AGGTACTTGATTTCGGTTGAAGGAAATTTCCGTGATAAGAGATCAGCTAA
ACAATGCGTCCAAGAAGTGAAAACGGTTGCTCTCCATCTTGGATCTCTTG
TTGCCCTATTCGACAAAAAGAAGGTCAGAGATGGGTTCTTCCAATCGTAC
TTAGACCCAAAGTCCAAACCAAGCACATCGAAACACTACCTAACGTCATT
GATTTCGTTCATGGGCTTCGTTATCACTGAAGGTCTCGAGAGTCTCGCAG
ACATCGTAAATCAAGACGACGTGGTTGCCATGAAACTTAGACTTGGTAAT
TGGAGGAAGGCTTATGGGAAAAAGCAAGATGTTTTACGTTGGGAGAGGGA
CGACGAAATCAACGAAGTTCTTGTGACACTCGATCAGATTAAAACTTTTG
AAGAAAGCGAACAAGCTATCAACGCAATCACGATCTTGGAACAAGAGACT
GATCTTCTTCCCTCAAGAAATGAATTTCTAACCGTCCGTGACTATCTCTT
TGCAAGAATTGCTTTGGCTAATGCCCACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024954XLOC_024954Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040889-proteinTCONS_00040889-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040889-exon-sc0002616-1575043694:3064..4116TCONS_00040889-exon-sc0002616-1575043694:3064..4116Clytia hemisphaericaexon
TCONS_00040889-exon-sc0002616-1575043694:2093..2602TCONS_00040889-exon-sc0002616-1575043694:2093..2602Clytia hemisphaericaexon
TCONS_00040889-exon-sc0002616-1575043694:970..1780TCONS_00040889-exon-sc0002616-1575043694:970..1780Clytia hemisphaericaexon
TCONS_00040889-exon-sc0002616-1510915933:3064..4116TCONS_00040889-exon-sc0002616-1510915933:3064..4116Clytia hemisphaericaexon
TCONS_00040889-exon-sc0002616-1510915933:2093..2602TCONS_00040889-exon-sc0002616-1510915933:2093..2602Clytia hemisphaericaexon
TCONS_00040889-exon-sc0002616-1510915933:970..1780TCONS_00040889-exon-sc0002616-1510915933:970..1780Clytia hemisphaericaexon
TCONS_00040889-exon-sc0002616-1491911889:3064..4116TCONS_00040889-exon-sc0002616-1491911889:3064..4116Clytia hemisphaericaexon
TCONS_00040889-exon-sc0002616-1491911889:2093..2602TCONS_00040889-exon-sc0002616-1491911889:2093..2602Clytia hemisphaericaexon
TCONS_00040889-exon-sc0002616-1491911889:970..1780TCONS_00040889-exon-sc0002616-1491911889:970..1780Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002616supercontigsc0002616:970..4116 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	3.88078	3.01809	1.96412	2.24196	5.22244	3.48777	3.18062	2.14934	0.0286564	0	0.104139	0.268798	0	0	0.25279	0.00190098	0.084749	0	1.51502	2.84625	0	5.26496e-07	0.0569039	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat
IPR002104Integrase_catalytic
IPR011010DNA_brk_join_enz
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040889 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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