TCONS_00040888 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040888
Unique NameTCONS_00040888
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1114

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040888 ID=TCONS_00040888|Name=TCONS_00040888|organism=Clytia hemisphaerica|type=transcript|length=1114bp
aaagggttaagcaCACATTTATAAAATTGTAACACGTTATTTTTCTCTCC
AGAAACGACAAAAAAGACCTTGTCCGGTGTGTAAAGCTCCATTGACTGGC
CTTCCAAGGCATATGAGGGATGTCCATGAATGGAGCTGGAAAAAGTCTGC
CAAAGTCAACAGTCTCTTTAAATCAAGGCAACCGTATACAAAGAAGGACG
GTCAATCAACAAGCGAACAGTCTGCGAAACGAAAAGGGAAACGCTGCCCC
ATGGAAGGATGCTTTTTCGTCGGTATTCAGGTGGGGAGACACCTCCGTAA
GGAACACTGTATGAAATTTGATGATGAAAATTATAAGGATGCACTCAAGG
CAGCCCGTGTCCATGAGCCTTTGACGTCCGAAAACATCCAAAAGAATCGC
CGGGCTGTTGCCAGAGAGTTTGAACTTGCTGAGAACATCCAGGAATATGA
AAAAGAAGTTGAGAGTGGTACCGGAAGGAGGTCTGAAGAGAAAGTTATTG
ATTATGCAATGATTATGTTCGAAAGGTACTTGATTTCGGTTGAAGGAAAT
TTCCGTGATAAGAGATCAGCTAAACAATGCGTCCAAGAAGTGAAAACGGT
TGCTCTCCATCTTGGATCTCTTGTTGCCCTATTCGACAAAAAGAAGGTCA
GAGATGGGTTCTTCCAATCGTACTTAGACCCAAAGTCCAAACCAAGCACA
TCGAAACACTACCTAACGTCATTGATTTCGTTCATGGGCTTCGTTATCAC
TGAAGGTCTCGAGAGTCTCGCAGACATCGTAAATCAAGACGACGTGGTTG
CCATGAAACTTAGACTTGGTAATTGGAGGAAGGCTTATGGGAAAAAGCAA
GATGTTTTACGTTGGGAGAGGGACGACGAAATCAACGAAGTTCTTGTGAC
ACTCGATCAGAttaaaacttttgaagaaagcGAACAAGCTATCAACGCAA
TCACGATCTTGGAACAAGAGACTGATCTTCTTCCCTCAAGAAATGAATTT
CTAACCGTCCGTGACTATCTCTTTGCAAGAATTGCTTTGGCTAATGCCCA
CCGAACTGGGGTATGCGCAAACATGACGATGAAGGAATACGAAAACGTAC
TCACCAAGGACGAT
Run BLAST on NCBI

transcript from alignment at sc0002616:1..4116-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040888 ID=TCONS_00040888|Name=TCONS_00040888|organism=Clytia hemisphaerica|type=transcript|length=4116bp|location=Sequence derived from alignment at sc0002616:1..4116- (Clytia hemisphaerica)
AAAGGGTTAAGCACACATTTATAAAATTGTAACACGTTATTTTTCTCTCC
AGAAACGACAAAAAAGACCTTGTCCGGTGTGTAAAGCTCCATTGACTGGC
CTTCCAAGGCATATGAGGGATGTCCATGAATGGAGCTGGAAAAAGTCTGC
CAAAGTCAACAGTCTCTTTAAATCAAGGCAACCGTATACAAAGAAGGACG
GTCAATCAACAAGCGAACAGTCTGCGAAACGAAAAGGGAAACGCTGCCCC
ATGGAAGGATGCTTTTTCGTCGGTATTCAGGTGGGGAGACACCTCCGTAA
GGAACACTGTATGAAATTTGATGATGAAAATTATAAGGATGCACTCAAGG
CAGCCCGTGTCCATGAGCCTTTGACGTCCGAAAACATCCAAAAGAATCGC
CGGGCTGTTGCCAGAGAGTTTGAACTTGCTGAGAACATCCAGGAATATGA
AAAAGAAGTTGAGAGTGGTACCGGAAGGAGGTCTGAAGAGAAAGTTATTG
ATTATGCAATGATTATGTTCGAAAGGTACTTGATTTCGGTTGAAGGAAAT
TTCCGTGATAAGAGATCAGCTAAACAATGCGTCCAAGAAGTGAAAACGGT
TGCTCTCCATCTTGGATCTCTTGTTGCCCTATTCGACAAAAAGAAGGTCA
GAGATGGGTTCTTCCAATCGTACTTAGACCCAAAGTCCAAACCAAGCACA
TCGAAACACTACCTAACGTCATTGATTTCGTTCATGGGCTTCGTTATCAC
TGAAGGTCTCGAGAGTCTCGCAGACATCGTAAATCAAGACGACGTGGTTG
CCATGAAACTTAGACTTGGTAATTGGAGGAAGGCTTATGGGAAAAAGCAA
GATGTTTTACGTTGGGAGAGGGACGACGAAATCAACGAAGTTCTTGTGAC
ACTCGATCAGATTAAAACTTTTGAAGAAAGCGAACAAGCTATCAACGCAA
TCACGATCTTGGAACAAGAGACTGATCTTCTTCCCTCAAGAAATGAATTT
CTAACCGTCCGTGACTATCTCTTTGCAAGAATTGCTTTGGCTAATGCCCA
CCGGTAAGCACATTTTTCATTTTAAGATGTCATTTTGGCGGTATCAGGAT
GTTTTGACCAAAACCTGCCCTCGGACAATGAAATGTTCTCGTATGCCTTA
TATGTACGGCGCCGTCTGGTGATTTTTACTTCTTTCCAACCCCGTCGATT
TTATCATAACCTCCATTTGTTCATTTTGGAAATAATTTTAGCTGTTAAAT
AAAAGTTCCCTGTTTTCACAGGTTTTAATATTCATCTTATTTTATTGTGG
ATAGAGGTTTTCCATATTTTGTTAAATATGTAGCATCTGTCATTATGAAA
ACAAACGTTCGATTTTTGTAAAGGATCGTATTGACAGATTCGAAGGTTTG
CCTTCATAATGGCGGAATATACGTAATTTAACAAAACGAAATGAATCAAC
TGAAAAATCTTTCAGAAGAATTGTTGCTAACCCCAAGCCACCTTGATATT
TGATTTCGTTTTAGAACTGGGGTATGCGCAAACATGACGATGAAGGAATA
CGAAAACGTACTCACCAAGGACGATCACAAGGTGATAAAGGTTCGGAAAC
ACAAAACGTTTTACAAGCATGGTTATGCTCATGTTGCGATTTCCAACGAA
CTGTTTCAGCTGCTCAAGTTGTACGTTGACAAAGTTCGTCCCACATTCAG
CCGTCCTGATTCCGAAAACGTATTTATCAGCTGTACCGGGCGAGGCATGG
AGTCTGGTGCCGTCAGCCGGAGGATTGACAAACTATGGAGAGAGTCGGGT
GTGTATGGGGATAATACACCACCCAAGAAAAACTTGGATGGTAACATCAT
CAGAAAATCAATGACATCAATGGTGCATGAAAATAACGACGAGGGAGAGA
AACAAGCAGTGGCTGATTTGCTTGCTCATCGCAAAACCACGGCTGAAAAT
ATATACCGTCAAAAGAAGATGGTTGATCAAGCCGTAAAGGCCGCGGGAAT
TATCGAGAGAGTTTCCCACAAGAGGTAAATGCTTTCATTGGTCTCATAAG
GAACTTTCACGTTTGTGGATTCAGTGAAAACTTATTCTGTGAAAAACATT
ACAGTATTTGTAGGTATTTGAAATATCTTTCTGGGATTTGCGAGGAAAAC
GCGTGAGATTGCTGAAATTAAATCCACGTGAAATTTTTCAAGATTTTTTT
CAGATTTTTGGCTCCAAATAGTACGTTTAAACATAAGCTACATTTGTTTA
GACGTACTATTTAGATGGTCCCGTTGGCAGCGTTGGGGTGGTTACCGAAT
CAGTCCAGTTTGCTTATCTCTATTTTTTAACCTTAGAAAAACTGATCAAG
TGGACTTTGCAACAACGTCAAAAACGAGTGAAGTTAAGCCACCATCTTCT
CAAACGGAAGAAGTTACGCCCCCATCTTTTCAAACGAAAGAAATTACGCC
CCCGTCTTCTCAAACGGAAGAAGTTTCGCCCCCATCTTTTCAAACGAAAG
AAATTACGCCCCCATCTTTTCAAACGGAAGAAATTACAAAGAAAACGAGT
GAAGTTCCGCCACCATCTTCTAAAACGGAAGAAATTACAAAAAAGGATGA
CGTTGAAGAAGACACTTATCCAGAAAAAGAAGTTAGCGAAATGAAACGTA
GTCGAACCGTTCCTTCCGGAAAAGGGAAAACGAAATCATTTTCTACTGAA
CAAACTGATTTATTGTATAAGATCACGAAAAAGATATATTTGGAGAATCT
ATCCATTAACGATGAAACAGCCAGGGTTGTCCTTGAGGAATCATCCGAGG
GGGAACAGTTTCTGAAAGATTATACGCTATATACCCTCGTGAATAAGTTG
AAATATGGACGAAGACTTTATAAAAATAATAAACTGTCTTTTTAGATGAA
CCTTCTTTGTATCACTAACTTGAATGCATGAAGTCATCGCGGACCTCGTT
TTAAAATTATAAAATTATTTTTTGTCTTTCGATTTTGTCAAACAAACTTT
CACACACCCTGTTCTCACAGACCCACTGGAAAAATTGGCCAAAATATCGT
CCCCGGTGGAAAACTATACTCTAATTTTTGTTCTCACTGAAAATTATCAG
ATAAGCAAATCCCCACTGCAGAGTATTGAGCTATTTTTTCATCCTCCCCG
AGTTTTCTGGCTAGAAAATATTGGAACCATAATCCACACCTTTAAAAACA
CGAGAAAATCTATCCCCATCGAGCTTTGTTCCGTTATTTTTATCCCCACT
TGCTGATAAAATCCCACCGGGTCTGTGAGAAGGGGGTGTTTTCACAAATA
GAAACTTCAATCATTATTCATTGATCATTGGATTTTTCTCACCTGAAGCG
TGGAGTCTTTTTGTCATTTGTTAGGACGTATATGTAGTTTTTTTATAAGT
TTGTAAAGGTATTAGTGACAATTCAACCTTTTATACTTTATGTACAGTTT
TAGATATTTGTACTATTTCTATATATCTATGGTGTCTCGCAAAAATATTC
ATATGATTTGTTTAGCTCTAGAGCAAACGCCCCACTCCCACCCATCGAAT
TTTTGTTAAAGAAGAACTCTGTCAATTAAACGACTTTTGATATTTTAGAT
TAAGAACAATAAAATCAAGAAAAACATGGAATCTTCACAAGCAAGAAAGG
TCATTGAAATTTTGGAAAACATAAATGGTGATCCATCTCGAGGCGAGCTT
AATATTGTCAGGAATTTCTTGCTGGCAAGAATTACCTTCGAAAATCCCAA
TAGGTAAGTGCTCTTCTTTCGTCTGGCTCTTCCTAGAAAATGATGTAAGC
GTTTATTTTTAGTTTATTTTCACTGACTTGATGCCCCTGTACCAGTATCA
GACCCACTTCACTTCTTAGGACAAGTTTCTTTCGCATTATTACGCCCACT
ATCTTTCAAATACATTTATCGACTTTTTGCATAGACGATTTAGACGTTTA
TTTATTTTTTGTTCATTTATATCTCCATAATAAGAAAAAAAGACGGGAAT
TTATTTTTGATCCGCTACGATACTATAATAAGCGTCAATTTTGATTTCGT
TTTAGAACTGGGGTATGCGCAAACATGACGATGAAGGAATACGAAAACGT
ACTCACCAAGGACGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024954XLOC_024954Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040888-exon-sc0002616-1575043694:3064..4116TCONS_00040888-exon-sc0002616-1575043694:3064..4116Clytia hemisphaericaexon
TCONS_00040888-exon-sc0002616-1575043694:1..61TCONS_00040888-exon-sc0002616-1575043694:1..61Clytia hemisphaericaexon
TCONS_00040888-exon-sc0002616-1510915933:3064..4116TCONS_00040888-exon-sc0002616-1510915933:3064..4116Clytia hemisphaericaexon
TCONS_00040888-exon-sc0002616-1510915933:1..61TCONS_00040888-exon-sc0002616-1510915933:1..61Clytia hemisphaericaexon
TCONS_00040888-exon-sc0002616-1491911889:3064..4116TCONS_00040888-exon-sc0002616-1491911889:3064..4116Clytia hemisphaericaexon
TCONS_00040888-exon-sc0002616-1491911889:1..61TCONS_00040888-exon-sc0002616-1491911889:1..61Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002616supercontigsc0002616:1..4116 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.845856	1.12794	6.14331e-07	1.8618	0.581496	1.84992	0.682381	0.144236	0.111082	0.125045	0.0826444	0.453882	0.484435	0.274145	0.16669	0.174429	0.0125284	0.663647	0.0500955	0.122593	0.210641	0.124773	0.107507	0.399912	0	0.0443309
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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