TCONS_00040884 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040884
Unique NameTCONS_00040884
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040884 ID=TCONS_00040884|Name=TCONS_00040884|organism=Clytia hemisphaerica|type=transcript|length=594bp
CCCGTCTATTGCAGTATGTTATACAAGGGTCATTTCTATTGTCagtattt
tctatgttttaaaCGTTAGTATAATGTTTGTAAAATCACAGAAGATTctg
aaagcttttttaagcaaagtgGCGATTACTTGTAGAGAAGCCAGGAAAAC
AGTATCCATACAGATCTTTGTGGTTCTGGTTGCATTGATCATTTCCGTAG
CCATGGCAAAGATTCTTTACGAAACGAAAACtccttttacattttacatC
GAGCAGGTACTGAAACAAAGGATATATTTTTGTGATACAGGTTTCCATTC
GAATATTCTTATTGCATACATCATGGTGATACAGTTTGCTTGTTTTGTAC
AAGCTTTTCGTGGACGATATTTACCAAGTGTCATGAACGATGGAATGTCT
TTGGTGTATACTTCATTTGCATCTACGGCAATGTTTACTGTTATGTATGT
AATCGTACCTTTTCAAAAGCCTGTTGAAAAGGAACTGTACCAAAACTTAA
CATTGATTATCAATTCcttgattacattgtttttaCTGTATGGACAGAAA
GCTGTCCGCATGGTTTTATATCCgcaacacaacacaaaaaccTA
Run BLAST on NCBI

protein sequence of TCONS_00040884-protein

>TCONS_00040884-protein ID=TCONS_00040884-protein|Name=TCONS_00040884-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
PSIAVCYTRVISIVSIFYVLNVSIMFVKSQKILKAFLSKVAITCREARKT
VSIQIFVVLVALIISVAMAKILYETKTPFTFYIEQVLKQRIYFCDTGFHS
NILIAYIMVIQFACFVQAFRGRYLPSVMNDGMSLVYTSFASTAMFTVMYV
IVPFQKPVEKELYQNLTLIINSLITLFLLYGQKAVRMVLYPQHNTKT
Run BLAST on NCBI

transcript from alignment at sc0002614:19653..20246

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040884 ID=TCONS_00040884|Name=TCONS_00040884|organism=Clytia hemisphaerica|type=transcript|length=594bp|location=Sequence derived from alignment at sc0002614:19653..20246 (Clytia hemisphaerica)
TAggtttttgtgttgtgttgcGGATATAAAACCATGCGGACAGCTTTCTG
TCCATACAGtaaaaacaatgtaatcaagGAATTGATAATCAATGTTAAGT
TTTGGTACAGTTCCTTTTCAACAGGCTTTTGAAAAGGTACGATTACATAC
ATAACAGTAAACATTGCCGTAGATGCAAATGAAGTATACACCAAAGACAT
TCCATCGTTCATGACACTTGGTAAATATCGTCCACGAAAAGCTTGTACAA
AACAAGCAAACTGTATCACCATGATGTATGCAATAAGAATATTCGAATGG
AAACCTGTATCACAAAAATATATCCTTTGTTTCAGTACCTGCTCGatgta
aaatgtaaaaggaGTTTTCGTTTCGTAAAGAATCTTTGCCATGGCTACGG
AAATGATCAATGCAACCAGAACCACAAAGATCTGTATGGATACTGTTTTC
CTGGCTTCTCTACAAGTAATCGCcactttgcttaaaaaagctttcagAAT
CTTCTGTGATTTTACAAACATTATACTAACGtttaaaacatagaaaatac
tGACAATAGAAATGACCCTTGTATAACATACTGCAATAGACGGG

Coding sequence (CDS) from alignment at sc0002614:19653..20246

>TCONS_00040884 ID=TCONS_00040884|Name=TCONS_00040884|organism=Clytia hemisphaerica|type=CDS|length=591bp|location=Sequence derived from alignment at sc0002614:19653..20246 (Clytia hemisphaerica)
ggtttttgtgttgtgttgcGGATATAAAACCATGCGGACAGCTTTCTGTC
CATACAGtaaaaacaatgtaatcaagGAATTGATAATCAATGTTAAGTTT
TGGTACAGTTCCTTTTCAACAGGCTTTTGAAAAGGTACGATTACATACAT
AACAGTAAACATTGCCGTAGATGCAAATGAAGTATACACCAAAGACATTC
CATCGTTCATGACACTTGGTAAATATCGTCCACGAAAAGCTTGTACAAAA
CAAGCAAACTGTATCACCATGATGTATGCAATAAGAATATTCGAATGGAA
ACCTGTATCACAAAAATATATCCTTTGTTTCAGTACCTGCTCGatgtaaa
atgtaaaaggaGTTTTCGTTTCGTAAAGAATCTTTGCCATGGCTACGGAA
ATGATCAATGCAACCAGAACCACAAAGATCTGTATGGATACTGTTTTCCT
GGCTTCTCTACAAGTAATCGCcactttgcttaaaaaagctttcagAATCT
TCTGTGATTTTACAAACATTATACTAACGtttaaaacatagaaaatactG
ACAATAGAAATGACCCTTGTATAACATACTGCAATAGACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024950XLOC_024950Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040884-proteinTCONS_00040884-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040884-exon-sc0002614-1491911889:19653..20246TCONS_00040884-exon-sc0002614-1491911889:19653..20246Clytia hemisphaericaexon
TCONS_00040884-exon-sc0002614-1510915933:19653..20246TCONS_00040884-exon-sc0002614-1510915933:19653..20246Clytia hemisphaericaexon
TCONS_00040884-exon-sc0002614-1575043694:19653..20246TCONS_00040884-exon-sc0002614-1575043694:19653..20246Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002614supercontigsc0002614:19653..20246 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.64505	0.808747	1.56505	1.53116	0.497078	0.490997	0.35542	0.33274	0	0.0961858	0	0.0613714	0.0612861	0.127292	0.209303	0.168461	0.138353	0.425423	2.05711	0.717538	0.534575	0.521494	0.105657	0.288174	0	0.529795	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017978GPCR_3_C
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040884 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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