TCONS_00040881 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040881
Unique NameTCONS_00040881
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040881 ID=TCONS_00040881|Name=TCONS_00040881|organism=Clytia hemisphaerica|type=transcript|length=286bp
AGGAAAGGTGACGACAGAAGATACATACGCAGCCGCAATTGACAAAATCA
GAAATTCCTTAAAGGGACAGATAAACGAAGTTTACCCGGTGTTTAAACTT
TTTAACGAGATGCCACAAGGGCAGATGCCGTTCACCGAATGATACACAAA
AGTTTTGGATCAAGCAAAGCTATGCAATTTCGCCACCTACACTGCAAAGA
AAGCCGCTCGCGACGCCATGACGATGCAGACGAATAACAATAAGCTCAGG
AAACATGCCCTCGCGGAGGGTGCAAATTTCGATGAG
Run BLAST on NCBI

transcript from alignment at sc0002612:23884..24169

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040881 ID=TCONS_00040881|Name=TCONS_00040881|organism=Clytia hemisphaerica|type=transcript|length=286bp|location=Sequence derived from alignment at sc0002612:23884..24169 (Clytia hemisphaerica)
CTCATCGAAATTTGCACCCTCCGCGAGGGCATGTTTCCTGAGCTTATTGT
TATTCGTCTGCATCGTCATGGCGTCGCGAGCGGCTTTCTTTGCAGTGTAG
GTGGCGAAATTGCATAGCTTTGCTTGATCCAAAACTTTTGTGTATCATTC
GGTGAACGGCATCTGCCCTTGTGGCATCTCGTTAAAAAGTTTAAACACCG
GGTAAACTTCGTTTATCTGTCCCTTTAAGGAATTTCTGATTTTGTCAATT
GCGGCTGCGTATGTATCTTCTGTCGTCACCTTTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024947XLOC_024947Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040881-exon-sc0002612-1491911889:23884..24169TCONS_00040881-exon-sc0002612-1491911889:23884..24169Clytia hemisphaericaexon
TCONS_00040881-exon-sc0002612-1510915933:23884..24169TCONS_00040881-exon-sc0002612-1510915933:23884..24169Clytia hemisphaericaexon
TCONS_00040881-exon-sc0002612-1575043694:23884..24169TCONS_00040881-exon-sc0002612-1575043694:23884..24169Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002612supercontigsc0002612:23884..24169 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.74787	3.12621	1.55564	7.10245	0.61761	0	2.94402	2.75616	1.54372	5.64239	2.31997	1.22005	1.82752	3.47949	1.82039	1.95356	3.43803	3.17148	0.973684	2.54722	3.9852	1.29589	0	0.954802	2.45856	1.75536	1.88394	0.670197	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040881 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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