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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040880 ID=TCONS_00040880|Name=TCONS_00040880|organism=Clytia hemisphaerica|type=transcript|length=754bp
GCCCTTTCTTTCTTGGGAAAAAAACAAGAAGTGTGCAAGCATATTGTATG
GATATTACAACAGCAGTCTCCTCTATCAAGTTGCTTTTACACAACAAGAG
ATTGATACGATTTTGAGTGGAGTGAAGGCAGTTCCTTCTGCATTGATGTT
TAAAAATGATttggaattgaatgacaaaagaCAAAATAATTTGGTTGGAA
GTGGAGCCAGTAATACTGTCGAGGCTGGTGTAGCGAATGTTGATGGAGCG
AATTAAAATGGTGGTGGAGAGAATGCAAATTGGAACGTTGATGGAGTGAA
TGCAAATGAGAAAGTTGGTGGACCAAACGTAACTGTTAATGTTGGTAGAG
CAAATGCAAATGTTGGTGGTGTGAATGCTGGGATAGTGAACGTTGAAGGT
GCAGATTGGATACTCTGTTACTTTAAGAAGCAAAAAGGTAGAGCCCCAAA
AATGTAAACGATGCAAAAGAGTGATAATGATCGGTGACCTTCATGTGGTG
ACGGATGCCTCTACACCCCACCAGACCAGACATTCCAAGTTAACTCAAGA
TTTCGATTTTGTGTCAATTTGAGATGTATCCAATACACACTTCCTCAGGC
AGAGATTCTCAAATGCACAGGATAAGTACCCGAGGAAGATTTAGCTTTGA
CCGAGGAGGAAACTCATCTACGCAGGCAAACAACCTTTAGAGATTGATTG
CTTTTTGTTTCATGCACCAAATATTAACTAacgttttaaaaatttaaaca
ctAT Run BLAST on NCBI transcript from alignment at sc0002612:20334..21457- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040880 ID=TCONS_00040880|Name=TCONS_00040880|organism=Clytia hemisphaerica|type=transcript|length=1124bp|location=Sequence derived from alignment at sc0002612:20334..21457- (Clytia hemisphaerica)
GCCCTTTCTTTCTTGGGAAAAAAACAAGAAGTGTGCAAGCATATTGTATG
GATATTACAACAGCAGTCTCCTCTATCAAGTTGCTTTTACACAACAAGAG
ATTGATACGATTTTGAGTGGAGTGAAGGCAGTTCCTTCTGCATTGATGTT
TAAAAATGGTAAGAAATATTTATTATATTTAAAGCATTGGAAAGTATTGG
CTTTTGAAAAAAAATACATGAGAACTTTACATCGATTGTTAGGCAAACTT
TGAAAATAAGTAATGATTGAGTAGTAATTTTTGTGAGCATTCATAATGTT
AAGCAAAATGCTTTTTTAGCAGGGGTCAAGCAGTTTGTACAAGACAATAT
GCCTACTAACTGTATTTTTGCAAAAAGCTAATAAGATCACCACCCTTGTA
CCCTTAGTATTGTTTTTTGTAATTTGAGAGCATTTTAAATATTTGGTGAG
AGTCATAGTGTTTCAGACCACTTCAAAAATTAATAGATAAGGTGGAGTGA
CATACATTTTTTCAATTCATATTTATAGATTTGGAATTGAATGACAAAAG
ACAAAATAATTTGGTTGGAAGTGGAGCCAGTAATACTGTCGAGGCTGGTG
TAGCGAATGTTGATGGAGCGAATTAAAATGGTGGTGGAGAGAATGCAAAT
TGGAACGTTGATGGAGTGAATGCAAATGAGAAAGTTGGTGGACCAAACGT
AACTGTTAATGTTGGTAGAGCAAATGCAAATGTTGGTGGTGTGAATGCTG
GGATAGTGAACGTTGAAGGTGCAGATTGGATACTCTGTTACTTTAAGAAG
CAAAAAGGTAGAGCCCCAAAAATGTAAACGATGCAAAAGAGTGATAATGA
TCGGTGACCTTCATGTGGTGACGGATGCCTCTACACCCCACCAGACCAGA
CATTCCAAGTTAACTCAAGATTTCGATTTTGTGTCAATTTGAGATGTATC
CAATACACACTTCCTCAGGCAGAGATTCTCAAATGCACAGGATAAGTACC
CGAGGAAGATTTAGCTTTGACCGAGGAGGAAACTCATCTACGCAGGCAAA
CAACCTTTAGAGATTGATTGCTTTTTGTTTCATGCACCAAATATTAACTA
ACGTTTTAAAAATTTAAACACTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040880-exon-sc0002612-1575043694:21300..21457 | TCONS_00040880-exon-sc0002612-1575043694:21300..21457 | Clytia hemisphaerica | exon |
| TCONS_00040880-exon-sc0002612-1575043694:20334..20929 | TCONS_00040880-exon-sc0002612-1575043694:20334..20929 | Clytia hemisphaerica | exon |
| TCONS_00040880-exon-sc0002612-1510915933:21300..21457 | TCONS_00040880-exon-sc0002612-1510915933:21300..21457 | Clytia hemisphaerica | exon |
| TCONS_00040880-exon-sc0002612-1510915933:20334..20929 | TCONS_00040880-exon-sc0002612-1510915933:20334..20929 | Clytia hemisphaerica | exon |
| TCONS_00040880-exon-sc0002612-1491911889:21300..21457 | TCONS_00040880-exon-sc0002612-1491911889:21300..21457 | Clytia hemisphaerica | exon |
| TCONS_00040880-exon-sc0002612-1491911889:20334..20929 | TCONS_00040880-exon-sc0002612-1491911889:20334..20929 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002612 | supercontig | sc0002612:20334..21457 - |
Blast
The following BLAST results are available for this feature:
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