TCONS_00040877 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040877
Unique NameTCONS_00040877
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040877 ID=TCONS_00040877|Name=TCONS_00040877|organism=Clytia hemisphaerica|type=transcript|length=387bp
TAGaagttgaataaaaaaattgaaatcacgaCACAAATAAATATAGTGAA
AACTGAATCGCAATCCTGTCGAAATAGCACAACCTAGCGGGTCATGCCAG
CCCCAAAAGCATAAGCAAAAGCAATGGAAAATacggtgaaaaaattaaaa
accagAAGCACTAAAATCTATGAAAAgttaagatttcaaaatattgttat
ttaacaaatcaatttcatcaaacctAAGGTTTGGTTTCAGAGTTCGTGTA
CCGCGAATACATGTGGCGACAGATCTTGTTAGAGCAAACGAAATTTTTGT
TCAAATccaatttttagtttgaaatcaattttaacgCTCCAAAGAAGTGC
TCAGCCTCTACACCCATTCCACCATTCATGGATAATA
Run BLAST on NCBI

transcript from alignment at sc0002611:15906..16292

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040877 ID=TCONS_00040877|Name=TCONS_00040877|organism=Clytia hemisphaerica|type=transcript|length=387bp|location=Sequence derived from alignment at sc0002611:15906..16292 (Clytia hemisphaerica)
TATTATCCATGAATGGTGGAATGGGTGTAGAGGCTGAGCACTTCTTTGGA
GcgttaaaattgatttcaaactaaaaattggATTTGAACAAAAATTTCGT
TTGCTCTAACAAGATCTGTCGCCACATGTATTCGCGGTACACGAACTCTG
AAACCAAACCTTaggtttgatgaaattgatttgttaaataacaatatttt
gaaatcttaacTTTTCATAGATTTTAGTGCTTctggtttttaattttttc
accgtATTTTCCATTGCTTTTGCTTATGCTTTTGGGGCTGGCATGACCCG
CTAGGTTGTGCTATTTCGACAGGATTGCGATTCAGTTTTCACTATATTTA
TTTGTGtcgtgatttcaatttttttattcaacttCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024943XLOC_024943Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040877-exon-sc0002611-1491911889:15906..16292TCONS_00040877-exon-sc0002611-1491911889:15906..16292Clytia hemisphaericaexon
TCONS_00040877-exon-sc0002611-1510915933:15906..16292TCONS_00040877-exon-sc0002611-1510915933:15906..16292Clytia hemisphaericaexon
TCONS_00040877-exon-sc0002611-1575043694:15906..16292TCONS_00040877-exon-sc0002611-1575043694:15906..16292Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002611supercontigsc0002611:15906..16292 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.93339	0.212397	0.661822	0.293859	0.257304	0.495267	0.605793	0.84811	1.48127	0.474793	0.576171	0.623881	0.703327	0.329694	2.25562	1.5537	0	0.360621	0.141625	0	0	1.93635	1.45517	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040877 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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