TCONS_00040875 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040875
Unique NameTCONS_00040875
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040875 ID=TCONS_00040875|Name=TCONS_00040875|organism=Clytia hemisphaerica|type=transcript|length=343bp
AGAAATTCAAGTAAAAGGAAGAATAAGTTTGAGTATGCTATTCATAAGta
aatttttgtaagaaaaaaccacGATCATTTGTTTTATAAAGTCTTAAAGC
AGCTGTGGTGAGAGCAAATTTATCCGTACATAATCCATAATTTTTTACCG
TTGACTGTctataaaatatgtttttttcaaCGGATAGCCCATTCACAAAG
TCTTGATGATGAACCCATCGGTTGATCTTTGATGAACAGGTTCAAAATCA
GGAGTATTCCAACAAAAACGTGTCCTACAAAATTTGTCTGTATTGCCACT
TGTAGCataattctatcaaaagaaTAGTACCGTGAACGGCCNN
Run BLAST on NCBI

transcript from alignment at sc0002611:467..809

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040875 ID=TCONS_00040875|Name=TCONS_00040875|organism=Clytia hemisphaerica|type=transcript|length=343bp|location=Sequence derived from alignment at sc0002611:467..809 (Clytia hemisphaerica)
NNGGCCGTTCACGGTACTAttcttttgatagaattatGCTACAAGTGGCA
ATACAGACAAATTTTGTAGGACACGTTTTTGTTGGAATACTCCTGATTTT
GAACCTGTTCATCAAAGATCAACCGATGGGTTCATCATCAAGACTTTGTG
AATGGGCTATCCGttgaaaaaaacatattttatagACAGTCAACGGTAAA
AAATTATGGATTATGTACGGATAAATTTGCTCTCACCACAGCTGCTTTAA
GACTTTATAAAACAAATGATCgtggttttttcttacaaaaatttaCTTAT
GAATAGCATACTCAAACTTATTCTTCCTTTTACTTGAATTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024941XLOC_024941Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040875-exon-sc0002611-1491911889:467..809TCONS_00040875-exon-sc0002611-1491911889:467..809Clytia hemisphaericaexon
TCONS_00040875-exon-sc0002611-1510915933:467..809TCONS_00040875-exon-sc0002611-1510915933:467..809Clytia hemisphaericaexon
TCONS_00040875-exon-sc0002611-1575043694:467..809TCONS_00040875-exon-sc0002611-1575043694:467..809Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002611supercontigsc0002611:467..809 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.293663	0	0.164433	1.06421	9.25602	4.83405	8.497	6.26372	1.1707	1.44323	2.87365	1.62532	0.849956	0	2.42292	0.999214	2.92845	3.33742	3.87472	1.48954	3.60246	6.76156	3.18864	4.82318	0	0.999459	3.94486	3.33957	1.64448	2.71034
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040875 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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