TCONS_00040874 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040874
Unique NameTCONS_00040874
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length700

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040874 ID=TCONS_00040874|Name=TCONS_00040874|organism=Clytia hemisphaerica|type=transcript|length=700bp
GATTAGGAATCCAGAAGAGGCAAAAAAGGTCTCGGACTCCGACTCTAACT
TCAGAGGaaaaatcagggtcggtcggatgacgggaaccaaacaattttta
gagATCCGCCTTTCCAATGTCACAATATGTGTAAGTACTTTTGTTTACAT
ATAATGAAAACACACGGTTTTTACCAAGCTGCCTCAGCCagtaaaaacat
gataaatgatcttgtctctaggtaactgctgtgTGTTGCTGTGGGAGATT
CAAAAGAACATTGTCTTCCCCTTCCCCCAAACAATAAAATGTCCCCAAAC
GACTCTATTCGTTTGAAGGACATCATCTGAATATATAAATTGAATTTGAT
ATTGGCTTCAATATTGACATCCCCTTGGTAGTCGATTTTCATGCACCAAA
GCAAAATCACTGCTCTAAATTCTGCACCAGAAAACTACCTGGTTTTTCGT
TTCTTGAGTCTATGATGGACTCATCATCAACATTAATTATCAATTATTGT
TGGAAGGGATAtagtaaatttgaaaaagcttaCCAATTTCATTATCAATT
TGGAGAACTTCAAATCCATCTTGATCGTTACCAGTTCCAACCCAATTTTT
CCAAGTTACAGGTGGCTTCTTGCTTCGAGTAGTGGTCGCCGCCATCTTGT
TCAGAGTTCAGATTGCCCAACGTGCTTGCCTTTTCCGCGgcaaattgata
Run BLAST on NCBI

transcript from alignment at sc0002609:15606..16305

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040874 ID=TCONS_00040874|Name=TCONS_00040874|organism=Clytia hemisphaerica|type=transcript|length=700bp|location=Sequence derived from alignment at sc0002609:15606..16305 (Clytia hemisphaerica)
tatcaatttgcCGCGGAAAAGGCAAGCACGTTGGGCAATCTGAACTCTGA
ACAAGATGGCGGCGACCACTACTCGAAGCAAGAAGCCACCTGTAACTTGG
AAAAATTGGGTTGGAACTGGTAACGATCAAGATGGATTTGAAGTTCTCCA
AATTGATAATGAAATTGGtaagctttttcaaatttactaTATCCCTTCCA
ACAATAATTGATAATTAATGTTGATGATGAGTCCATCATAGACTCAAGAA
ACGAAAAACCAGGTAGTTTTCTGGTGCAGAATTTAGAGCAGTGATTTTGC
TTTGGTGCATGAAAATCGACTACCAAGGGGATGTCAATATTGAAGCCAAT
ATCAAATTCAATTTATATATTCAGATGATGTCCTTCAAACGAATAGAGTC
GTTTGGGGACATTTTATTGTTTGGGGGAAGGGGAAGACAATGTTCTTTTG
AATCTCCCACAGCAACAcacagcagttacctagagacaagatcatttatc
atgtttttactGGCTGAGGCAGCTTGGTAAAAACCGTGTGTTTTCATTAT
ATGTAAACAAAAGTACTTACACATATTGTGACATTGGAAAGGCGGATctc
taaaaattgtttggttcccgtcatccgaccgaccctgatttttCCTCTGA
AGTTAGAGTCGGAGTCCGAGACCTTTTTTGCCTCTTCTGGATTCCTAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024940XLOC_024940Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040874-exon-sc0002609-1491911889:15606..16305TCONS_00040874-exon-sc0002609-1491911889:15606..16305Clytia hemisphaericaexon
TCONS_00040874-exon-sc0002609-1510915933:15606..16305TCONS_00040874-exon-sc0002609-1510915933:15606..16305Clytia hemisphaericaexon
TCONS_00040874-exon-sc0002609-1575043694:15606..16305TCONS_00040874-exon-sc0002609-1575043694:15606..16305Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002609supercontigsc0002609:15606..16305 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.226726	0.14107	0.452435	0.981672	0.587369	0.310383	0.837602	0.7839	0.547999	0.302055	0.805849	0.530145	0.581185	0.648776	0	0.13218	0.162727	0.0557348	0.231084	0.160752	0.209798	0.204788	0	0.0753806	0.0783461	0.555442	0.0993789	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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