TCONS_00040873 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040873
Unique NameTCONS_00040873
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length946

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040873 ID=TCONS_00040873|Name=TCONS_00040873|organism=Clytia hemisphaerica|type=transcript|length=946bp
ATCAAATACAAAAGAGCAGGAAAAACTGAAGAGTTTCTTTTTTAAGTTAT
TATACAGTTTAAAATATGAAGTAGTATCCatgaaaatatattaaaatctA
TATACGCTTAGAATATGAAAatacaaattaagaacagcAGAAGCAAAGTA
TATGATTGAGAAAGGCAAGTCAAGGAAGCTAAATACTGGTCTATTCTCAA
AGCTGGGCAAGTTACATTGGCCAAAACAGTGCCACAGAATAGCTGAAATA
TAGGGCagaacaaaatagaaaaaacaacaaattgacACACATTCACATTC
CGTTCAACAAGGAGCTTTACACTTTTAAAAGTCTCAGGTTGATTGCAACA
GCGTTGTGCTGTATTTGCCGGACAAAGTTGTCGAAACTTGTGCTTGGATA
GATTCTCGGGTTTCATGATTTTAGACTTTAGCTCAGTCACCTCATCATTC
AGCTTATTCAATTTTTCCACTTCCTTCTCTAGGGTCACTATCCAATCTTT
CATTCAATTGATGTTATCTTCCACCATTATCTCCTCCGGTTTATTTTGCT
CCTTCAAGATGAAACCTACAAGACTATAAGACTACATACAAACTTGGCCA
TTCCTCATTGTCCGGAATGTCTATTTCGTCCTCTGTCATCCTTATTAGCA
CTGGTCTACCAACTACAAAGTAGGCCAGCCCTATTGTATCCGGTTTGATG
GACCAAAGCTGACCAATTTTCACAAATAACCTCACTAGATTCCACTCTTC
CGACTCTCCCGATCGTCCTGTGTCAAAAGACTCATGATGGTTGAATTATA
AAGGACAATACTGATGACAGCCATggaatttttgttttagttACAGATCT
AAAGAAACAAACAAATCAACATTTAGATGAATataaacccgggggggggg
cactgaccttgacaaCCGACGGGGACGGGCCGCTGGAGTTTCAAAA
Run BLAST on NCBI

protein sequence of TCONS_00040873-protein

>TCONS_00040873-protein ID=TCONS_00040873-protein|Name=TCONS_00040873-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MKDWIVTLEKEVEKLNKLNDEVTELKSKIMKPENLSKHKFRQLCPANTAQ
RCCNQPETFKSVKLLVERNVNVCQFVVFSILFCPIFQLFCGTVLANVTCP
ALRIDQYLASLTCLSQSYTLLLLFLICIFIF
Run BLAST on NCBI

transcript from alignment at sc0002609:12285..13230

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040873 ID=TCONS_00040873|Name=TCONS_00040873|organism=Clytia hemisphaerica|type=transcript|length=946bp|location=Sequence derived from alignment at sc0002609:12285..13230 (Clytia hemisphaerica)
TTTTGAAACTCCAGCGGCCCGTCCCCGTCGGttgtcaaggtcagtgcccc
ccccccgggtttatATTCATCTAAATGTTGATTTGTTTGTTTCTTTAGAT
CTGTaactaaaacaaaaattccATGGCTGTCATCAGTATTGTCCTTTATA
ATTCAACCATCATGAGTCTTTTGACACAGGACGATCGGGAGAGTCGGAAG
AGTGGAATCTAGTGAGGTTATTTGTGAAAATTGGTCAGCTTTGGTCCATC
AAACCGGATACAATAGGGCTGGCCTACTTTGTAGTTGGTAGACCAGTGCT
AATAAGGATGACAGAGGACGAAATAGACATTCCGGACAATGAGGAATGGC
CAAGTTTGTATGTAGTCTTATAGTCTTGTAGGTTTCATCTTGAAGGAGCA
AAATAAACCGGAGGAGATAATGGTGGAAGATAACATCAATTGAATGAAAG
ATTGGATAGTGACCCTAGAGAAGGAAGTGGAAAAATTGAATAAGCTGAAT
GATGAGGTGACTGAGCTAAAGTCTAAAATCATGAAACCCGAGAATCTATC
CAAGCACAAGTTTCGACAACTTTGTCCGGCAAATACAGCACAACGCTGTT
GCAATCAACCTGAGACTTTTAAAAGTGTAAAGCTCCTTGTTGAACGGAAT
GTGAATGTGTgtcaatttgttgttttttctattttgttctGCCCTATATT
TCAGCTATTCTGTGGCACTGTTTTGGCCAATGTAACTTGCCCAGCTTTGA
GAATAGACCAGTATTTAGCTTCCTTGACTTGCCTTTCTCAATCATATACT
TTGCTTCTgctgttcttaatttgtatTTTCATATTCTAAGCGTATATaga
ttttaatatattttcatGGATACTACTTCATATTTTAAACTGTATAATAA
CTTAAAAAAGAAACTCTTCAGTTTTTCCTGCTCTTTTGTATTTGAT

Coding sequence (CDS) from alignment at sc0002609:12285..13230

>TCONS_00040873 ID=TCONS_00040873|Name=TCONS_00040873|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0002609:12285..13230 (Clytia hemisphaerica)
ATGAAAGATTGGATAGTGACCCTAGAGAAGGAAGTGGAAAAATTGAATAA
GCTGAATGATGAGGTGACTGAGCTAAAGTCTAAAATCATGAAACCCGAGA
ATCTATCCAAGCACAAGTTTCGACAACTTTGTCCGGCAAATACAGCACAA
CGCTGTTGCAATCAACCTGAGACTTTTAAAAGTGTAAAGCTCCTTGTTGA
ACGGAATGTGAATGTGTgtcaatttgttgttttttctattttgttctGCC
CTATATTTCAGCTATTCTGTGGCACTGTTTTGGCCAATGTAACTTGCCCA
GCTTTGAGAATAGACCAGTATTTAGCTTCCTTGACTTGCCTTTCTCAATC
ATATACTTTGCTTCTgctgttcttaatttgtatTTTCATATTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024939XLOC_024939Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040873-proteinTCONS_00040873-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040873-exon-sc0002609-1491911889:12285..13230TCONS_00040873-exon-sc0002609-1491911889:12285..13230Clytia hemisphaericaexon
TCONS_00040873-exon-sc0002609-1510915933:12285..13230TCONS_00040873-exon-sc0002609-1510915933:12285..13230Clytia hemisphaericaexon
TCONS_00040873-exon-sc0002609-1575043694:12285..13230TCONS_00040873-exon-sc0002609-1575043694:12285..13230Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002609supercontigsc0002609:12285..13230 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.74885	1.61403	0.978378	0.5992	21.2162	14.3225	10.4718	11.3131	6.08203	9.36843	9.1738	5.0434	5.88789	6.8462	5.46452	7.47646	5.37992	4.95074	11.0914	10.7864	5.36667	6.84597	5.96956	8.98312	5.00148	6.69981	12.0005	10.9575	6.33906	4.90831
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040873 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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