TCONS_00040864 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040864
Unique NameTCONS_00040864
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length529

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040864 ID=TCONS_00040864|Name=TCONS_00040864|organism=Clytia hemisphaerica|type=transcript|length=529bp
CACATTTTATAATGCTTTTATTGTTATCATATAAACAACCTATACGCAAC
CTTGGTGACAATGTACActcaaccataatttttgaatttcagcaTTCTCG
AACAAGAGCGTTGTCAAAAAGATCTTGACAACACATTTTATAATGCTTTT
ATTGTTATCATATAAACATTGAGGTGTTCAATTTTATTGTTCTTTGACGC
TGAAACATATTCTATCGAACGCGATTGGCCATAATTACTTCACTATTTTG
TTATGCTAATGAAGTTTATTGTTATGCCCTTTTGCAAATTATATGACTAT
AAACTCTGGAACTCAGATTTTTTCAATCATcttatcttgaatttttttga
gaagACTTGAGAAGACGTTTCATTTGGAATCAGAATCAAATCGTATCACT
ATGAAGTTCACTATGATATTGGCCACCATCTTGGCTTTATGTTTGGTTGT
AAATGGCGGAAAGTCAATGAAAGAAcgattcttgaaaaaaatctggTATG
TATCATTAATTTTAAAAGATACTGTGCGT
Run BLAST on NCBI

transcript from alignment at sc0002606:12955..13706+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040864 ID=TCONS_00040864|Name=TCONS_00040864|organism=Clytia hemisphaerica|type=transcript|length=752bp|location=Sequence derived from alignment at sc0002606:12955..13706+ (Clytia hemisphaerica)
CACATTTTATAATGCTTTTATTGTTATCATATAAACAACCTATACGCAAC
CTTGGTGACAATGTACActcaaccataatttttgaatttcagcaTTCTCG
AACAAGAGCGTTGTCAAAAAGATCTTGACAACACATTTTATAATGCTTTT
ATTGTTATCATATAAACATTGAGGTGTTCAATTTTATTGTTCTTTGACGC
TGAAACATATTCTATCGAACGCGATTGGCCATAATTACTTCACTATTTTG
TTATGCTAATGAAGTTTATTGTTATGCCCTTTTGCAAATTATATGACTAT
AAACTCTGGAACTCAGATTTTTTCAATCATcttatcttgaatttttttga
gaagACTTGAGAAGACGTTTCATTTGGAATCAGAATCAAATCGGTAAGCA
GTATTTCATTCCTATCTCGTGCAGCCTATTTGCActaacacacccctgtc
tcaatcaCCCGGCgatcgaaataaaaatactaATAAAAGTGATCTAATTG
TGAGCTAATTTTGAagattctattgtaatacagtGTGTGCCAAAGTGAAA
AGGAACCATGTTTTAAATTTATCACCTTCaacaatatatatatttttagc
ttttttacaCTTTCAGTATCACTATGAAGTTCACTATGATATTGGCCACC
ATCTTGGCTTTATGTTTGGTTGTAAATGGCGGAAAGTCAATGAAAGAAcg
attcttgaaaaaaatctggTATGTATCATTAATTTTAAAAGATACTGTGC
GT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024930XLOC_024930Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040864-exon-sc0002606-1491911889:12955..13347TCONS_00040864-exon-sc0002606-1491911889:12955..13347Clytia hemisphaericaexon
TCONS_00040864-exon-sc0002606-1510915933:12955..13347TCONS_00040864-exon-sc0002606-1510915933:12955..13347Clytia hemisphaericaexon
TCONS_00040864-exon-sc0002606-1575043694:12955..13347TCONS_00040864-exon-sc0002606-1575043694:12955..13347Clytia hemisphaericaexon
TCONS_00040864-exon-sc0002606-1491911889:13571..13706TCONS_00040864-exon-sc0002606-1491911889:13571..13706Clytia hemisphaericaexon
TCONS_00040864-exon-sc0002606-1510915933:13571..13706TCONS_00040864-exon-sc0002606-1510915933:13571..13706Clytia hemisphaericaexon
TCONS_00040864-exon-sc0002606-1575043694:13571..13706TCONS_00040864-exon-sc0002606-1575043694:13571..13706Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002606supercontigsc0002606:12955..13706 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.66083	3.1353	1.2553	2.33343	21.5297	20.203	13.3986	16.1466	3.64363	2.54592	2.02183	2.51065	0.0737348	0	1.13318	0.472919	0	0	0	0	0	0	1.27119	0.808987	0	0	0	0.162242	0.24611	0.37612
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040864 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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