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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040862 ID=TCONS_00040862|Name=TCONS_00040862|organism=Clytia hemisphaerica|type=transcript|length=1110bp
ggcttcttgtttttcttttcaacacAAACACATCCATCTTCCAAATCGTT
AACCTCAAAAGCGATTCTAGTGAAAGGAGGTTTGTTTTCAACAACATCAT
GAGTGTGGTAGTTTGAATGGAATAATATCAATGAAGAAccataaatttca
atttcaattttgaagaatCATTATTGTAGTTGTAGATTTAAAATCTATAT
CAAAAATTATCTAATGCTTGCACTTGTAGTAGAAACTTTCGACAACTTTC
ACGAGGCTTTTAATTATCTCCATTATTTAGATTTCATTAAACAAGTACGC
TAACTACTACGGAGCTAATTAGAATACTGTCTGATAAGTTTGCGTGGCGC
AAACggcttatgcaagaatttaCGCGGGAAATAATTTCCCGATTCCCTGA
ACATTTAATTCCGAATCGGGCGACCaaactttcacatttttgtCTTAAGG
AGGAGAAACACCGAGATTAATGGTCTCCTTTCACTTCGTGAGGCGACCAA
ATATAACGAGTATAACATACCTTTTCATTTAGCTTCCTAATTCTTGTGAT
AAATGCTCCTTTTTTATTTGGTACACCATATCTTTACATCGTATTTTAGG
ACAAAAATGAACTATTGGCTTCCCTGTTGGAAAGCCAAATGCAGACTTCA
TCGCGCAGAGAGAtcgaatctcaaaaaagttacaatGAACGTTCACccaa
aaagaaaagtttgttgAGAATGGAAGAAAGTGTCGCTATTGACATGCTTG
TACGATATGGTTTATCATTAAGACGACTATCTTCACAAGATGAATGCACC
GAGAGATTGAAGAAATTGCTTTCTATAATGAAAAACCATTGGTCAACGAA
GTGTCACGTGATGGAATACAaaggatttgattggcttatGGGaatattgt
ttttgattttcaaaggaGACGAAGGGAGAACATTTGgagttttgaaaagt
ttatcaACACACGAGGATGCTTCTTTCATTTGGCCCTCTTTAGCCATGGT
AAAAGAACAAGCACTTCATGTTGACGCCAAATTATTCCATTGGATCGAAT
ACATTCTGGAGAGAGAGCTACCACATGTTTCTGCAGCTTTTCGAATCTCC
GGCCTCCCTC Run BLAST on NCBI transcript from alignment at sc0002605:1..1958- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040862 ID=TCONS_00040862|Name=TCONS_00040862|organism=Clytia hemisphaerica|type=transcript|length=1958bp|location=Sequence derived from alignment at sc0002605:1..1958- (Clytia hemisphaerica)
GGCTTCTTGTTTTTCTTTTCAACACAAACACATCCATCTTCCAAATCGTT
AACCTCAAAAGCGATTCTAGTGAAAGGAGGTTTGTTTTCAACAACATCAT
GAGTGTGGTAGTTTGAATGGAATAATATCAATGAAGAACCATAAATTTCA
ATTTCAATTTTGAAGAATCATTATTGTAGTTGTAGATTTAAAATCTATAT
CAAAAATTATCTAATGCTTGCACTTGTAGTAGAAACTTTCGACAACTTTC
ACGAGGCTTTTAATTATCTCCATTATTTAGATTTCATTAAACAAGTACGC
TAACTACTACGGAGCTAATTAGAATACTGTCTGATAAGTTTGCGTGGCGC
AAACGGCTTATGCAAGAATTTACGCGGGAAATAATTTCCCGATTCCCTGA
ACATTTAATTCCGAATCGGGCGACCAAACTTTCACATTTTTGTCTTAAGG
AGGAGAAACACCGAGATTAATGGTCTCCTTTCACTTCGTGAGGCGACCAA
ATATAACGAGTATAACATACCTTTTCATTTAGCTTCCTAATTCTTGTGAT
AAATGCTCCTTTTTTATTTGGTACACCATATCTTTACATCGTATTTTAGG
ACAAAAATGAACTATTGGCTTCCCTGTTGGAAAGCCAAATGCAGACTTCA
TCGCGCAGAGAGATCGAATCTCAAAAAAGTTACAATGAACGTTCACCCAA
AAAGAAAAGTTTGTTGAGAATGGAAGAAAGTGTCGCTATTGACATGCTTG
TACGATATGGTTTATCATTAAGGTAAATCCCAATCAAAAGATTTTTTTAT
ACGATTACTACTTCTAGATACCTTTTGAAATAGTTTACAGACAACTCTCT
CTAATTCGAACTTTCAATATTCGAATTTTTCTGTAATTCGAATTAAAATA
TTGGTCGACAAAGAACGTTACAAATTACTCTCTGAAATTCGAATCTTTCT
CTCATTCGATTAGATGAAACTTGTAGGTTCTTTGACGATCGAATTAGAGA
GAGTAAACTGCAGTGTATGGTAAACTTATTGAACTACTATAACTTACTAA
TTACCTAATACGCCCCCCCTCCCCGCTAATTAATTTTTCGAAAACTTTCC
ATCCAGGACATTCTTTCCATCCAGGACATTCTTATTCCAACCTACTATAC
ACTAGATGTGGCCCTTACGGGTTTGCATTTTCAGTCTTTCAAATTGCTTT
TGGTAGGGTCGAAATGAGAAACGAAGCACCATAAATGTCTAAAAGTGGCA
AAACCGAAAAAGAAAATTTTTGGGCAAAAGTTTGCAAAAATCCCACCATT
TTTGCCCTTCTCTTGAAAAATCGTAAGGGTTCTAAATTGAGACTGTAATT
TTTTATCTAGACATGAGGTCGTTTTCAAATCGATTTCCCCCCGGAACTAA
ATCCAAATAATTTAAGTAACATCACACTGTTTTTTGTAGACGACTATCTT
CACAAGATGAATGCACCGAGAGATTGAAGAAATTGCTTTCTATAATGAAA
AACCATTGGTCAACGAAGTGTCACGTGATGGAATACAAAGGATTTGATTG
GCTTATGGGAATATTGTTTTTGATTTTCAAAGGAGACGAAGGGAGAACAT
TTGGAGTTTTGAAAAGTTTATCAACACACGAGGATGCTTCTTTCATTTGG
CCCTCTTTAGCCATGGTATGTTTTTCTGTTTCTGTTTTCTTTTTGAAGAA
GGATTGAGATTTTTCTGGTTTTTAAAACATTTTTTAGAGAATTAAAATAG
AAAGTAGTCTTACAATAGTCTTTCATATTTTTTACAAATAAACTTCTAGT
ACTGTGATATATTGAATTGACCACTTTTCTACATTTATGTGTTTAGGTAA
AAGAACAAGCACTTCATGTTGACGCCAAATTATTCCATTGGATCGAATAC
ATTCTGGAGAGAGAGCTACCACATGTTTCTGCAGCTTTTCGAATCTCCGG
CCTCCCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040862-exon-sc0002605-1575043694:1187..1958 | TCONS_00040862-exon-sc0002605-1575043694:1187..1958 | Clytia hemisphaerica | exon |
| TCONS_00040862-exon-sc0002605-1575043694:294..519 | TCONS_00040862-exon-sc0002605-1575043694:294..519 | Clytia hemisphaerica | exon |
| TCONS_00040862-exon-sc0002605-1575043694:1..112 | TCONS_00040862-exon-sc0002605-1575043694:1..112 | Clytia hemisphaerica | exon |
| TCONS_00040862-exon-sc0002605-1510915933:1187..1958 | TCONS_00040862-exon-sc0002605-1510915933:1187..1958 | Clytia hemisphaerica | exon |
| TCONS_00040862-exon-sc0002605-1510915933:294..519 | TCONS_00040862-exon-sc0002605-1510915933:294..519 | Clytia hemisphaerica | exon |
| TCONS_00040862-exon-sc0002605-1510915933:1..112 | TCONS_00040862-exon-sc0002605-1510915933:1..112 | Clytia hemisphaerica | exon |
| TCONS_00040862-exon-sc0002605-1491911889:1187..1958 | TCONS_00040862-exon-sc0002605-1491911889:1187..1958 | Clytia hemisphaerica | exon |
| TCONS_00040862-exon-sc0002605-1491911889:294..519 | TCONS_00040862-exon-sc0002605-1491911889:294..519 | Clytia hemisphaerica | exon |
| TCONS_00040862-exon-sc0002605-1491911889:1..112 | TCONS_00040862-exon-sc0002605-1491911889:1..112 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002605 | supercontig | sc0002605:1..1958 - |
Blast
The following BLAST results are available for this feature:
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