|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040861 ID=TCONS_00040861|Name=TCONS_00040861|organism=Clytia hemisphaerica|type=transcript|length=542bp
TTAACCTCAAAAGCGATTCTAGTGAAAGGAGGACAAAAATGAACTATTGG
CTTCCCTGTTGGAAAGCCAAATGCAGACTTCATCGCGCAGAGAGAtcgaa
tctcaaaaaagttacaatGAACGTTCACccaaaaagaaaagtttgttgAG
AATGGAAGAAAGTGTCGCTATTGACATGCTTGTACGATATGGTTTATCAT
TAAGACGACTATCTTCACAAGATGAATGCACCGAGAGATTGAAGAAATTG
CTTTCTATAATGAAAAACCATTGGTCAACGAAGTGTCACGTGATGGAATA
CAaaggatttgattggcttatGGGaatattgtttttgattttcaaaggaG
ACGAAGGGAGAACATTTGgagttttgaaaagtttatcaACACACGAGGAT
GCTTCTTTCATTTGGCCCTCTTTAGCCATGGTAAAAGAACAAGCACTTCA
TGTTGACGCCAAATTATTCCATTGGATCGAATACATTCTGGAGAGAGAGC
TACCACATGTTTCTGCAGCTTTTCGAATCTCCGGCCTCCCTC Run BLAST on NCBI protein sequence of TCONS_00040861-protein >TCONS_00040861-protein ID=TCONS_00040861-protein|Name=TCONS_00040861-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MQTSSRREIESQKSYNERSPKKKSLLRMEESVAIDMLVRYGLSLRRLSSQ
DECTERLKKLLSIMKNHWSTKCHVMEYKGFDWLMGILFLIFKGDEGRTFG
VLKSLSTHEDASFIWPSLAMVKEQALHVDAKLFHWIEYILERELPHVSAA
FRISGLP Run BLAST on NCBI transcript from alignment at sc0002605:1..1910- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040861 ID=TCONS_00040861|Name=TCONS_00040861|organism=Clytia hemisphaerica|type=transcript|length=1910bp|location=Sequence derived from alignment at sc0002605:1..1910- (Clytia hemisphaerica)
TTAACCTCAAAAGCGATTCTAGTGAAAGGAGGTTTGTTTTCAACAACATC
ATGAGTGTGGTAGTTTGAATGGAATAATATCAATGAAGAACCATAAATTT
CAATTTCAATTTTGAAGAATCATTATTGTAGTTGTAGATTTAAAATCTAT
ATCAAAAATTATCTAATGCTTGCACTTGTAGTAGAAACTTTCGACAACTT
TCACGAGGCTTTTAATTATCTCCATTATTTAGATTTCATTAAACAAGTAC
GCTAACTACTACGGAGCTAATTAGAATACTGTCTGATAAGTTTGCGTGGC
GCAAACGGCTTATGCAAGAATTTACGCGGGAAATAATTTCCCGATTCCCT
GAACATTTAATTCCGAATCGGGCGACCAAACTTTCACATTTTTGTCTTAA
GGAGGAGAAACACCGAGATTAATGGTCTCCTTTCACTTCGTGAGGCGACC
AAATATAACGAGTATAACATACCTTTTCATTTAGCTTCCTAATTCTTGTG
ATAAATGCTCCTTTTTTATTTGGTACACCATATCTTTACATCGTATTTTA
GGACAAAAATGAACTATTGGCTTCCCTGTTGGAAAGCCAAATGCAGACTT
CATCGCGCAGAGAGATCGAATCTCAAAAAAGTTACAATGAACGTTCACCC
AAAAAGAAAAGTTTGTTGAGAATGGAAGAAAGTGTCGCTATTGACATGCT
TGTACGATATGGTTTATCATTAAGGTAAATCCCAATCAAAAGATTTTTTT
ATACGATTACTACTTCTAGATACCTTTTGAAATAGTTTACAGACAACTCT
CTCTAATTCGAACTTTCAATATTCGAATTTTTCTGTAATTCGAATTAAAA
TATTGGTCGACAAAGAACGTTACAAATTACTCTCTGAAATTCGAATCTTT
CTCTCATTCGATTAGATGAAACTTGTAGGTTCTTTGACGATCGAATTAGA
GAGAGTAAACTGCAGTGTATGGTAAACTTATTGAACTACTATAACTTACT
AATTACCTAATACGCCCCCCCTCCCCGCTAATTAATTTTTCGAAAACTTT
CCATCCAGGACATTCTTTCCATCCAGGACATTCTTATTCCAACCTACTAT
ACACTAGATGTGGCCCTTACGGGTTTGCATTTTCAGTCTTTCAAATTGCT
TTTGGTAGGGTCGAAATGAGAAACGAAGCACCATAAATGTCTAAAAGTGG
CAAAACCGAAAAAGAAAATTTTTGGGCAAAAGTTTGCAAAAATCCCACCA
TTTTTGCCCTTCTCTTGAAAAATCGTAAGGGTTCTAAATTGAGACTGTAA
TTTTTTATCTAGACATGAGGTCGTTTTCAAATCGATTTCCCCCCGGAACT
AAATCCAAATAATTTAAGTAACATCACACTGTTTTTTGTAGACGACTATC
TTCACAAGATGAATGCACCGAGAGATTGAAGAAATTGCTTTCTATAATGA
AAAACCATTGGTCAACGAAGTGTCACGTGATGGAATACAAAGGATTTGAT
TGGCTTATGGGAATATTGTTTTTGATTTTCAAAGGAGACGAAGGGAGAAC
ATTTGGAGTTTTGAAAAGTTTATCAACACACGAGGATGCTTCTTTCATTT
GGCCCTCTTTAGCCATGGTATGTTTTTCTGTTTCTGTTTTCTTTTTGAAG
AAGGATTGAGATTTTTCTGGTTTTTAAAACATTTTTTAGAGAATTAAAAT
AGAAAGTAGTCTTACAATAGTCTTTCATATTTTTTACAAATAAACTTCTA
GTACTGTGATATATTGAATTGACCACTTTTCTACATTTATGTGTTTAGGT
AAAAGAACAAGCACTTCATGTTGACGCCAAATTATTCCATTGGATCGAAT
ACATTCTGGAGAGAGAGCTACCACATGTTTCTGCAGCTTTTCGAATCTCC
GGCCTCCCTC Coding sequence (CDS) from alignment at sc0002605:1..1910- >TCONS_00040861 ID=TCONS_00040861|Name=TCONS_00040861|organism=Clytia hemisphaerica|type=CDS|length=1413bp|location=Sequence derived from alignment at sc0002605:1..1910- (Clytia hemisphaerica)
GTAAAAGAACAAGCACTTCATGTTGACGCCAAATTATTCCATTGGATCGA
ATACATTCTGGAGAGAGAGCTACCACATGTTTCTGCAGCTTTTCGAATCT
CCGGCCTCCCTACGACTATCTTCACAAGATGAATGCACCGAGAGATTGAA
GAAATTGCTTTCTATAATGAAAAACCATTGGTCAACGAAGTGTCACGTGA
TGGAATACAAAGGATTTGATTGGCTTATGGGAATATTGTTTTTGATTTTC
AAAGGAGACGAAGGGAGAACATTTGGAGTTTTGAAAAGTTTATCAACACA
CGAGGATGCTTCTTTCATTTGGCCCTCTTTAGCCATGATGCAGACTTCAT
CGCGCAGAGAGATCGAATCTCAAAAAAGTTACAATGAACGTTCACCCAAA
AAGAAAAGTTTGTTGAGAATGGAAGAAAGTGTCGCTATTGACATGCTTGT
ACGATATGGTTTATCATTAAGGTAAAAGAACAAGCACTTCATGTTGACGC
CAAATTATTCCATTGGATCGAATACATTCTGGAGAGAGAGCTACCACATG
TTTCTGCAGCTTTTCGAATCTCCGGCCTCCCTACGACTATCTTCACAAGA
TGAATGCACCGAGAGATTGAAGAAATTGCTTTCTATAATGAAAAACCATT
GGTCAACGAAGTGTCACGTGATGGAATACAAAGGATTTGATTGGCTTATG
GGAATATTGTTTTTGATTTTCAAAGGAGACGAAGGGAGAACATTTGGAGT
TTTGAAAAGTTTATCAACACACGAGGATGCTTCTTTCATTTGGCCCTCTT
TAGCCATGATGCAGACTTCATCGCGCAGAGAGATCGAATCTCAAAAAAGT
TACAATGAACGTTCACCCAAAAAGAAAAGTTTGTTGAGAATGGAAGAAAG
TGTCGCTATTGACATGCTTGTACGATATGGTTTATCATTAAGGTAAAAGA
ACAAGCACTTCATGTTGACGCCAAATTATTCCATTGGATCGAATACATTC
TGGAGAGAGAGCTACCACATGTTTCTGCAGCTTTTCGAATCTCCGGCCTC
CCTACGACTATCTTCACAAGATGAATGCACCGAGAGATTGAAGAAATTGC
TTTCTATAATGAAAAACCATTGGTCAACGAAGTGTCACGTGATGGAATAC
AAAGGATTTGATTGGCTTATGGGAATATTGTTTTTGATTTTCAAAGGAGA
CGAAGGGAGAACATTTGGAGTTTTGAAAAGTTTATCAACACACGAGGATG
CTTCTTTCATTTGGCCCTCTTTAGCCATGATGCAGACTTCATCGCGCAGA
GAGATCGAATCTCAAAAAAGTTACAATGAACGTTCACCCAAAAAGAAAAG
TTTGTTGAGAATGGAAGAAAGTGTCGCTATTGACATGCTTGTACGATATG
GTTTATCATTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040861-exon-sc0002605-1575043694:1880..1910 | TCONS_00040861-exon-sc0002605-1575043694:1880..1910 | Clytia hemisphaerica | exon |
| TCONS_00040861-exon-sc0002605-1575043694:1187..1359 | TCONS_00040861-exon-sc0002605-1575043694:1187..1359 | Clytia hemisphaerica | exon |
| TCONS_00040861-exon-sc0002605-1575043694:294..519 | TCONS_00040861-exon-sc0002605-1575043694:294..519 | Clytia hemisphaerica | exon |
| TCONS_00040861-exon-sc0002605-1575043694:1..112 | TCONS_00040861-exon-sc0002605-1575043694:1..112 | Clytia hemisphaerica | exon |
| TCONS_00040861-exon-sc0002605-1510915933:1880..1910 | TCONS_00040861-exon-sc0002605-1510915933:1880..1910 | Clytia hemisphaerica | exon |
| TCONS_00040861-exon-sc0002605-1510915933:1187..1359 | TCONS_00040861-exon-sc0002605-1510915933:1187..1359 | Clytia hemisphaerica | exon |
| TCONS_00040861-exon-sc0002605-1510915933:294..519 | TCONS_00040861-exon-sc0002605-1510915933:294..519 | Clytia hemisphaerica | exon |
| TCONS_00040861-exon-sc0002605-1510915933:1..112 | TCONS_00040861-exon-sc0002605-1510915933:1..112 | Clytia hemisphaerica | exon |
| TCONS_00040861-exon-sc0002605-1491911889:1880..1910 | TCONS_00040861-exon-sc0002605-1491911889:1880..1910 | Clytia hemisphaerica | exon |
| TCONS_00040861-exon-sc0002605-1491911889:1187..1359 | TCONS_00040861-exon-sc0002605-1491911889:1187..1359 | Clytia hemisphaerica | exon |
| TCONS_00040861-exon-sc0002605-1491911889:294..519 | TCONS_00040861-exon-sc0002605-1491911889:294..519 | Clytia hemisphaerica | exon |
| TCONS_00040861-exon-sc0002605-1491911889:1..112 | TCONS_00040861-exon-sc0002605-1491911889:1..112 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002605 | supercontig | sc0002605:1..1910 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR032735 | BROMI |
Blast
The following BLAST results are available for this feature:
|
