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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040857 ID=TCONS_00040857|Name=TCONS_00040857|organism=Clytia hemisphaerica|type=transcript|length=771bp
ATAAATGGaaaaaggaaaatcttttaACGATGGCTGACTTCATTGCCATT
GGGAGCACTCCTTATGTTGTAAAACTAGGCAAGATATTAGAAGATCCTTT
GTCATCAAAACTAACGACAAATTTGGTCAGCGAGTGCCGCAACCTAttaa
ttttcatcatttgtcAGGGAAATGCTGCCCGTTCATCAAATATTCAAGAA
ATTACTTTGGAGCATATCGACAATGCCAAAAGTTCTAAAGAGTACATCAC
TAATGGCACTTCTGCAATGGTGGTGGCGTCAGAGAAGTACAAAACTTCAC
TGATTTATGGGGAGAAGTTATTGGTCATTCCCGGTGACGTATGGGTCCTT
CTTATGAATTACATCAAACATATGAGGCCATTAGTCATACAAGATGACAA
TGCCGAGCCATGTAAGCGCTTCCTTTTCACTTCAACAAGACAAACGAAAA
CAAACAAGAAGAGGAAAAATACGGCAagaacaaaaatctaaaaagatGAC
GACCTCACTGGTATCAAGTGCTTGCTCTACTCTCTTTGAGAAGAGTGGGT
TTTGCAAGGGAAGCAgCAAACGGTGCTCCCCGACAAGAATTCGACATGCG
GTGGCAACAGAGCTTGCCGGGCAAgacaaagaaaatattgaaacgGTGTC
AAGAATGTTTATGAAGAACCGGCCCAACACAACCGCGAAATTCTATGTGC
TCAACTATGAGCAAAGAGAGTCTGTTCGACTCTCTATGAACCTCTTCGCG
AAAATGAGAGGCGACTTCGAT Run BLAST on NCBI protein sequence of TCONS_00040857-protein >TCONS_00040857-protein ID=TCONS_00040857-protein|Name=TCONS_00040857-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
KWKKENLLTMADFIAIGSTPYVVKLGKILEDPLSSKLTTNLVSECRNLLI
FIICQGNAARSSNIQEITLEHIDNAKSSKEYITNGTSAMVVASEKYKTSL
IYGEKLLVIPGDVWVLLMNYIKHMRPLVIQDDNAEPCKRFLFTSTRQTKT
NKKRKNTARTKI Run BLAST on NCBI transcript from alignment at sc0002598:1898..4829+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040857 ID=TCONS_00040857|Name=TCONS_00040857|organism=Clytia hemisphaerica|type=transcript|length=2932bp|location=Sequence derived from alignment at sc0002598:1898..4829+ (Clytia hemisphaerica)
ATAAATGGaaaaaggaaaatcttttaACGATGGCTGACTTCATTGCCATT
GGGAGCACTCCTTATGTTGTAAAACTAGGCAAGATATTAGAAGATCCTTT
GTCATCAAAACTAACGACAAATTTGGTCAGCGAGTGCCGCAACCTAttaa
ttttcatcatttgtcAGGTAAATACATAACATAATTTTTCCGGGTAAGCT
ACTATTTGAATAGCTCTAGCATATCACAGCATTGCAATTTTCTTTCCCTA
TCTTTTACGAGTATGACACTAAAAAGCATActctacactcttttttatga
gCGTAATAGTCCAGTagaattagctcaaaaaaggcCCTAACCCTGAAAAA
AAAAGTatgtggctgaaatttggcacagaggtCCCCTAGGGTGTCATGAG
TCACCAAAAAAAACCTACAGTCAGTAGGAATGGTTTTGGACCCTTTTTGG
GccatttttcgatgacgtcacttttcAGTACAAGTCCCtgtaaacaaaat
ttttaaaaaattctcaaaagggAGTTTTCACTATTCTATCTGAAAGATCA
TGAAATGTAGGTGAtgaaaatggggtcatttgtaaaATTTCGTTATCTAG
AATCCCCAAAATGGCCCCGAATGGCCCAAAATCCGCCATATTTCTTGATG
AGGTCATCGACTATCTAGGAAGATTTACTTTTTTAAACTAGGCTAAGAAG
GTGGGCCTTGAAAAGTGCTATTTGGAAATGGTATGGTTTATTGGGTTTGG
ATTTCTAAATCACGAGATATTTAATGTTAAAGATCAacaatttttgctga
atcagcacATTTGGCAGCAAAAGTCAAacttcaaactcaaatatctcgCG
ATCTANTAATAGTCCAGTagaattagctcaaaaaaggGAGATATTTAATG
TTAAAGATCAacaatttttgctgaatcagcacATTTGGCAGCAAAAGTCA
AacttcaaactcaaatatctcgCGATCTAGACATCAAAACCCTATAAACC
ATACCATTTCCAAATAGTACTTTTCAAGGTCTATCTTTCTagccaaattt
gaaaacagCAAACTTCCTGCatagttgatgacgtcatcaaggaAAATGGC
AGACTTTGGGCAATTTGGGGCCATTTTAGGGGGTCTAGATAACGAAATtt
tacaaatgaccccattttcaTCATCTACTTTTCATGATCTTTCAGATAGA
ACAGTCAAAATTTCCTTTGGatcacattttgaaaattttgtttacaGGGA
TTTGTACTGAAAAGTGACGTCATCGTAAAATGGCCCAAAAAGGGTCCAAA
ACCATTCTTACTGACTGCAGGTTTTTTTGGTGACTCATGACATCGTAAGG
GacctctgtgccaaatttcagccacatACTATTTTTTCAGGGTAAAAACC
TAATTCTACAGGACTAAAAGGCTAgtaagcatactgaagctctctaattt
attcaaaacgcaaatttccagaaaaactcTTAAAAGACTTGTTTGCTTAT
ATCATGGGAAATCGTTATTTTACTTTACGGTATTATGTTCTTCGTCATGT
CATTGGTATTTCGACGGGCTTTGGTTCTGCTCCCAATTTCTTTTCATATT
ACTTTGAATCGAAGTagataaaaacttgaaaaaggagGACAGATTACTAg
tactcgggtaacttaatgcatgtcccagaattgcattaatttttccgccc
cagttccagtccctaaaccataacaaactatacatttttgaaagCGTATT
TGGATNTGTGTACTTGagaaaactttttctctttattattttgaatcaaA
GTAgattaaaaacttgaaaatagaGGATCTTAAATAAGCCAAACGGTCAA
GTGAAACTTTTCTGTTCAGATGACCGTCTAACTATTGATAAAGACTTTTA
TCTCAAAGAGAGGGAAATTTTCAGGCTTTCGACCACCCTATAAAGTTTAG
TGGACTACGTGTTTTAAACTGCCTTTCCTTTTTATGTTACAGGGAAATGC
TGCCCGTTCATCAAATATTCAAGAAATTACTTTGGAGCATATCGACAATG
CCAAAAGTTCTAAAGAGTACATCACTAATGGCACTTCTGCAATGGTGGTG
GCGTCAGAGAAGTACAAAACTTCACTGATTTATGGGGAGAAGTTATTGGT
CATTCCCGGTGACGTATGGGTCCTTCTTATGAATTACATCAAACATATGA
GGCCATTAGTCATACAAGATGACAATGCCGAGCCATGTAAGCGCTTCCTT
TTCACTTCAACAAGACAAACGAAAACAAACAAGAAGAGGAAAAATACGGC
AagaacaaaaatctaaaaagatGACGACCTCACTGGTATCAAGTGCTTGC
TCTACTCTCTTTGAGAAGAGTGGGTTTTGCAAGGGAAGCAggtaaatttt
tctattttctctaTTTGAATGATACGTCCAGTGGAAATCATAATTGTTAG
gtgttgttttcctttttttattctaTACCAACGGCTTGAATATATCACTG
TATACGATAAGTTATTAAAAATACCTACATGGACTACTGAAATTGTTTCA
taactaattcaaattcaaaactttcaaatcattCGGAACTTTATTTGTCG
GCATCTAAAATAACCTGGTATTAGATAACCTAGAAATAATACATTAAACT
TCTAAAATCAAGACATGTTATTGGCATCAAATCACTTGGTTACCTCATGT
AAGTATAACTCTTTAAATTTTTAACAGCAAACGGTGCTCCCCGACAAGAA
TTCGACATGCGGTGGCAACAGAGCTTGCCGGGCAAgacaaagaaaatatt
gaaacgGTGTCAAGAATGTTTATGAAGAACCGGCCCAACACAACCGCGAA
ATTCTATGTGCTCAACTATGAGCAAAGAGAGTCTGTTCGACTCTCTATGA
ACCTCTTCGCGAAAATGAGAGGCGACTTCGAT Coding sequence (CDS) from alignment at sc0002598:1898..4829+ >TCONS_00040857 ID=TCONS_00040857|Name=TCONS_00040857|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at sc0002598:1898..4829+ (Clytia hemisphaerica)
AAATGGaaaaaggaaaatcttttaACGATGGCTGACTTCATTGCCATTGG
GAGCACTCCTTATGTTGTAAAACTAGGCAAGATATTAGAAGATCCTTTGT
CATCAAAACTAACGACAAATTTGGTCAGCGAGTGCCGCAACCTAttaatt
ttcatcatttgtcAGGGAAATGCTGCCCGTTCATCAAATATTCAAGAAAT
TACTTTGGAGCATATCGACAATGCCAAAAGTTCTAAAGAGTACATCACTA
ATGGCACTTCTGCAATGGTGGTGGCGTCAGAGAAGTACAAAACTTCACTG
ATTTATGGGGAGAAGTTATTGGTCATTCCCGGTGACGTATGGGTCCTTCT
TATGAATTACATCAAACATATGAGGCCATTAGTCATACAAGATGACAATG
CCGAGCCATGTAAGCGCTTCCTTTTCACTTCAACAAGACAAACGAAAACA
AACAAGAAGAGGAAAAATACGGCAagaacaaaaatctaaAAATGGaaaaa
ggaaaatcttttaACGATGGCTGACTTCATTGCCATTGGGAGCACTCCTT
ATGTTGTAAAACTAGGCAAGATATTAGAAGATCCTTTGTCATCAAAACTA
ACGACAAATTTGGTCAGCGAGTGCCGCAACCTAttaattttcatcatttg
tcAGGGAAATGCTGCCCGTTCATCAAATATTCAAGAAATTACTTTGGAGC
ATATCGACAATGCCAAAAGTTCTAAAGAGTACATCACTAATGGCACTTCT
GCAATGGTGGTGGCGTCAGAGAAGTACAAAACTTCACTGATTTATGGGGA
GAAGTTATTGGTCATTCCCGGTGACGTATGGGTCCTTCTTATGAATTACA
TCAAACATATGAGGCCATTAGTCATACAAGATGACAATGCCGAGCCATGT
AAGCGCTTCCTTTTCACTTCAACAAGACAAACGAAAACAAACAAGAAGAG
GAAAAATACGGCAagaacaaaaatctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040857-exon-sc0002598-1491911889:1898..2064 | TCONS_00040857-exon-sc0002598-1491911889:1898..2064 | Clytia hemisphaerica | exon |
| TCONS_00040857-exon-sc0002598-1510915933:1898..2064 | TCONS_00040857-exon-sc0002598-1510915933:1898..2064 | Clytia hemisphaerica | exon |
| TCONS_00040857-exon-sc0002598-1575043694:1898..2064 | TCONS_00040857-exon-sc0002598-1575043694:1898..2064 | Clytia hemisphaerica | exon |
| TCONS_00040857-exon-sc0002598-1491911889:3890..4288 | TCONS_00040857-exon-sc0002598-1491911889:3890..4288 | Clytia hemisphaerica | exon |
| TCONS_00040857-exon-sc0002598-1510915933:3890..4288 | TCONS_00040857-exon-sc0002598-1510915933:3890..4288 | Clytia hemisphaerica | exon |
| TCONS_00040857-exon-sc0002598-1575043694:3890..4288 | TCONS_00040857-exon-sc0002598-1575043694:3890..4288 | Clytia hemisphaerica | exon |
| TCONS_00040857-exon-sc0002598-1491911889:4625..4829 | TCONS_00040857-exon-sc0002598-1491911889:4625..4829 | Clytia hemisphaerica | exon |
| TCONS_00040857-exon-sc0002598-1510915933:4625..4829 | TCONS_00040857-exon-sc0002598-1510915933:4625..4829 | Clytia hemisphaerica | exon |
| TCONS_00040857-exon-sc0002598-1575043694:4625..4829 | TCONS_00040857-exon-sc0002598-1575043694:4625..4829 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002598 | supercontig | sc0002598:1898..4829 + |
Blast
The following BLAST results are available for this feature:
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