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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040852 ID=TCONS_00040852|Name=TCONS_00040852|organism=Clytia hemisphaerica|type=transcript|length=2384bp
ctacgaaccatgaaaatcttctttgaacaaggctttcttgtcttgttgat
gagtttcatttcacttctcagatccatatgcacactttcgagagaaaata
gaaatctcttcctcctcttgagtgttcaaaattgactacattgttattta
actgaaagaagCATAAGAGAAGAGATAGTTATGGTTAGCAAAAGAATTCA
ACCTTGGTATTAAATATCTTCTTGTATCTTCagcatcatagaaaaataaa
cattgaaactttgcacaaagatagttgaataaaaacacttcATGATTTTG
GTGCTTTACCTATTTGCTTGACACTTAAAAGTTTCACATTAAAAATCATA
TCCAGCTGAATCTCGAGCATCACTGAAAAATATGCTTTGAAACTTTCCAT
AATGATAGTTCAATAATAATATGACCTATTTCGGTTAATATTAACACTGC
TCAGCCACAAAATGATCAATAAAGATCTCGTAAACATTACAGTTTTTATC
AATAAAGATTTTCCAGTCGCCATTTTCTTCTTGCTCGTTTTTTGAGCAAG
ACTAGAATCTCGTTCGGTTTTCTCGCGCCCTTGACGGGAAATACTCACTC
GGGTAGTTTTACTTTTTGCGGGAAAAACATGAGCGAGTTTCTTTGCTGTC
GAGTTCAACTGTAGCAATACACTATTCCTTTAATATGCGGCACGTGTGGA
CCATGAAATATTTTACGTGTTGTCTCAATGACTTTCTTTAGAAGACTGtg
ataaacaaaattaacaaaagcacTAAATAGGCCTCGATTAGTCTCGATGA
CCTAAAACAATATAATACAATAAAATATCACAGTGACGACCACTATAAGT
GGCCACGACCAGCGATGGGTTATCGAGCTTATCTGCCTTCTCTACCGTTT
AGAATGTTCAAATCAAGTCCTTAGAATACTAaaaagtcattttcttgaca
aagtgacactatagacaaaaatattgacattaaGTATGATTTCTGTAAGT
TTTATTACAccgaatattttaattatgctgaatgagacgcttttagtatg
aatagataaaacttgtcagtaggaaaaaattaGGAAGGACAGTTTCAGAG
GTATAAATCTGATCAATTATTCTATTGTCTTTATGTGGACAAAATGACTA
ATTTCGACAGAAATAGTGATCTGATGATTAAATGCAAAGCTCCACAAACC
ATTTTAAAAAGATTCTTCAAAAGACTGGTTACTTCCTAATTATTTTGATG
CTGGTAATACAAAAGGATAGAAATTGACACCATAATCAAGCTCCAAGAGC
CTCGAAATGGTTGTTTTACGCATTGGGCACGTGGCTCTAATTAAAGATTA
CACAGGGGTGAGGCTACTCTTCAATACGATATATTAAAATGATAAGGAGA
TTAGAAAAAGGGAAAAAAATCGATAACCCAAATTCATCTGGTCGCTATTT
CTGGTTGATGTTTAGAAACTAGCCTTTCTCATGAAAAATGATTAATTAAA
TCTCTTACCTTTTTCATAGTAAATTTTCATCTTCATTCTTTTCTACAAGT
TTCCGTACTCAAAGCTTTCTTTCCAAAAGTTTTTTCAACATTCATGCTTG
TGCATCAATTGGTCAATTTGGCTCATTAAAACCGTCATTTTAAGTTTTGA
CCAGTCAGATTTATAAATCGTTTTATTATACCATTTAGAGTATGTACAAA
CTTTCAAGACGTCCTTTATAATTACCAATTTAAAGAAAAAGGAGACTTTG
TTGTCTGTATAAGATTTATTTTATTGACGTTTAGAACATGTCTGAACCGG
GTGTTGAACATTTCTTGATCATTTTCCAATTTCATGTATTTTATAGGTAT
GTAGCGATGGAAGTGCTGCGGAAATCTGATCGCTTGAAAGCCTTGCTCAC
AAACAAAGGATTGTACATCGTGCGTTCCGGTCCGCCAAGTTTGGAAAATA
TTGATCTCCATGTGGAATATTCTCTCTTTGTGGACGCCGTACCCATAGTT
GAAGGCAATAATCGGCACAATCTGGAGATCTATTACTATCCGGAGAAGCC
ACGCATCGGTATGATGGACCGTCAGCAGAGATATCCTATCAGATGCGATG
GTGAAAACCAGGTGGCTAATCGGGTGAGTCAAAAGGCTAACCATTTGAAG
TCACTGCACGATGAAGCACAATTCAGTGTCGCTCAAACCAATACGTGATA
ATAATGAAGAATTACGAGTAGCTATTTTTTTACCTTAATCATTTTGTGAC
TTGGTTTTGATTGAGGGTTTCTGAATAGCAAATTCAAAATATTGAAATAG
ATCACCGACGTCGGGCCCTTCAGGCATATTTTCCTGACACGTTTACTCTT
AGGTGCCAAATAAACGGGGATGGGGGGTGTTGGA Run BLAST on NCBI transcript from alignment at sc0002594:1909..4770- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040852 ID=TCONS_00040852|Name=TCONS_00040852|organism=Clytia hemisphaerica|type=transcript|length=2862bp|location=Sequence derived from alignment at sc0002594:1909..4770- (Clytia hemisphaerica)
CTACGAACCATGAAAATCTTCTTTGAACAAGGCTTTCTTGTCTTGTTGAT
GAGTTTCATTTCACTTCTCAGATCCATATGCACACTTTCGAGAGAAAATA
GAAATCTCTTCCTCCTCTTGAGTGTTCAAAATTGACTACATTGTTATTTA
ACTGAAAGAAGCATAAGAGAAGAGATAGTTATGGTTAGCAAAAGAATTCA
ACCTTGGTATTAAATATCTTCTTGTATCTTCAGCATCATAGAAAAATAAA
CATTGAAACTTTGCACAAAGATAGTTGAATAAAAACACTTCATGATTTTG
GTGCTTTACCTATTTGCTTGACACTTAAAAGTTTCACATTAAAAATCATA
TCCAGCTGAATCTCGAGCATCACTGAAAAATATGCTTTGAAACTTTCCAT
AATGATAGTTCAATAATAATATGACCTATTTCGGTTAATATTAACACTGC
TCAGCCACAAAATGATCAATAAAGATCTCGTAAACATTACAGTTTTTATC
AATAAAGATTTTCCAGTCGCCATTTTCTTCTTGCTCGTTTTTTGAGCAAG
ACTAGAATCTCGTTCGGTTTTCTCGCGCCCTTGACGGGAAATACTCACTC
GGGTAGTTTTACTTTTTGCGGGAAAAACATGAGCGAGTTTCTTTGCTGTC
GAGTTCAACTGTAGCAATACACTATTCCTTTAATATGCGGCACGTGTGGA
CCATGAAATATTTTACGTGTTGTCTCAATGACTTTCTTTAGAAGACTGTG
ATAAACAAAATTAACAAAAGCACTAAATAGGCCTCGATTAGTCTCGATGA
CCTAAAACAATATAATACAATAAAATATCACAGTGACGACCACTATAAGT
GGCCACGACCAGCGATGGGTTATCGAGCTTATCTGCCTTCTCTACCGTTT
AGAATGTTCAAATCAAGTCCTTAGAATACTAAAAAGTCATTTTCTTGACA
AAGTGACACTATAGACAAAAATATTGACATTAAGTATGATTTCTGTAAGT
TTTATTACACCGAATATTTTAATTATGCTGAATGAGACGCTTTTAGTATG
AATAGATAAAACTTGTCAGTAGGAAAAAATTAGGAAGGACAGTTTCAGAG
GTATAAATCTGATCAATTATTCTATTGTCTTTATGTGGACAAAATGACTA
ATTTCGACAGAAATAGTGATCTGATGATTAAATGCAAAGCTCCACAAACC
ATTTTAAAAAGATTCTTCAAAAGACTGGTTACTTCCTAATTATTTTGATG
CTGGTAATACAAAAGGATAGAAATTGACACCATAATCAAGCTCCAAGAGC
CTCGAAATGGTTGTTTTACGCATTGGGCACGTGGCTCTAATTAAAGATTA
CACAGGGGTGAGGCTACTCTTCAATACGATATATTAAAATGATAAGGAGA
TTAGAAAAAGGGAAAAAAATCGATAACCCAAATTCATCTGGTCGCTATTT
CTGGTTGATGTTTAGAAACTAGCCTTTCTCATGAAAAATGATTAATTAAA
TCTCTTACCTTTTTCATAGTAAATTTTCATCTTCATTCTTTTCTACAAGT
TTCCGTACTCAAAGCTTTCTTTCCAAAAGTTTTTTCAACATTCATGCTTG
TGCATCAATTGGTCAATTTGGCTCATTAAAACCGTCATTTTAAGTTTTGA
CCAGTCAGATTTATAAATCGTTTTATTATACCATTTAGAGTATGTACAAA
CTTTCAAGACGTCCTTTATAATTACCAATTTAAAGAAAAAGGAGACTTTG
TTGTCTGTATAAGATTTATTTTATTGACGTTTAGAACATGTCTGAACCGG
GTGTTGAACATTTCTTGATCATTTTCCAATTTCATGTATTTTATAGGTAT
GTAGCGATGGAAGTGCTGCGGAAATCTGATCGCTTGAAAGCCTTGCTCAC
AAACAAAGGATTGTACATCGTGCGTTCCGGTCCGCCAAGTTTGGAAAATA
TTGATCTCCATGTGGAATATTCTCTCTTTGTGGACGCCGTACCCATAGTT
GAAGGTAAAGCGAACTTATAGTGTGCGCTATTTCGAGTAGCCATACCGTT
GTTGTCACAAAATTAAGTACGGATATACTAGGATCAATTCAAAAGTGATT
CTCACGACGAAAAACCTTTTAAATTGTGTTTTTTTTTCAGGCAATAATCG
GCACAATCTGGAGATCTATTACTATCCGGAGAAGCCACGCATCGGTATGA
TGGACCGTCAGCAGAGATATCCTATCAGATGCGATGGTGAAAACCAGGTG
GCTAATCGGGTAAGTTTCCCTCTCTCTCATTTGACTTGCTCACTTAGAAA
GTAATAGTCGCTAAGCATGAAGCTCGAGCTTGACTTTAACAACATTCTTT
TTGGTTCCTATTTTCGTTTCGAGAATCTTGTCCTAAAAAGTGTTGAATAA
GACCAAAGCCCCAAATATTTTCTGATAAAAAATGCATTTTGATAGAATCG
CTTCTTTCATCTTCATAGGCAAACTCATATATCCTAGACCAGAGTAGTAA
AACCACGTATTTGTACGAGTTTATCAAGTTTATATTCAGTATATTAAGAA
AAACGTTTTTCTTACCATCATGTTTCACTTCGAGCTCTTTTGTTTTTGTA
GGTGAGTCAAAAGGCTAACCATTTGAAGTCACTGCACGATGAAGCACAAT
TCAGTGTCGCTCAAACCAATACGTGATAATAATGAAGAATTACGAGTAGC
TATTTTTTTACCTTAATCATTTTGTGACTTGGTTTTGATTGAGGGTTTCT
GAATAGCAAATTCAAAATATTGAAATAGATCACCGACGTCGGGCCCTTCA
GGCATATTTTCCTGACACGTTTACTCTTAGGTGCCAAATAAACGGGGATG
GGGGGTGTTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040852-exon-sc0002594-1575043694:2767..4770 | TCONS_00040852-exon-sc0002594-1575043694:2767..4770 | Clytia hemisphaerica | exon |
| TCONS_00040852-exon-sc0002594-1575043694:2512..2630 | TCONS_00040852-exon-sc0002594-1575043694:2512..2630 | Clytia hemisphaerica | exon |
| TCONS_00040852-exon-sc0002594-1575043694:1909..2169 | TCONS_00040852-exon-sc0002594-1575043694:1909..2169 | Clytia hemisphaerica | exon |
| TCONS_00040852-exon-sc0002594-1510915933:2767..4770 | TCONS_00040852-exon-sc0002594-1510915933:2767..4770 | Clytia hemisphaerica | exon |
| TCONS_00040852-exon-sc0002594-1510915933:2512..2630 | TCONS_00040852-exon-sc0002594-1510915933:2512..2630 | Clytia hemisphaerica | exon |
| TCONS_00040852-exon-sc0002594-1510915933:1909..2169 | TCONS_00040852-exon-sc0002594-1510915933:1909..2169 | Clytia hemisphaerica | exon |
| TCONS_00040852-exon-sc0002594-1491911889:2767..4770 | TCONS_00040852-exon-sc0002594-1491911889:2767..4770 | Clytia hemisphaerica | exon |
| TCONS_00040852-exon-sc0002594-1491911889:2512..2630 | TCONS_00040852-exon-sc0002594-1491911889:2512..2630 | Clytia hemisphaerica | exon |
| TCONS_00040852-exon-sc0002594-1491911889:1909..2169 | TCONS_00040852-exon-sc0002594-1491911889:1909..2169 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002594 | supercontig | sc0002594:1909..4770 - |
Blast
The following BLAST results are available for this feature:
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