TCONS_00040851 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040851
Unique NameTCONS_00040851
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040851 ID=TCONS_00040851|Name=TCONS_00040851|organism=Clytia hemisphaerica|type=transcript|length=567bp
caaaaatattgacattaaGTATGATTTCTGTATGTAGCGATGGAAGTGCT
GCGGAAATCTGATCGCTTGAAAGCCTTGCTCACAAACAAAGGATTGTACA
TCGTGCGTTCCGGTCCGCCAAGTTTGGAAAATATTGATCTCCATGTGGAA
TATTCTCTCTTTGTGGACGCCGTACCCATAGTTGAAGGCAATAATCGGCA
CAATCTGGAGATCTATTACTATCCGGAGAAGCCACGCATCGGTATGATGG
ACCGTCAGCAGAGATATCCTATCAGATGCGATGGTGAAAACCAGGTGGCT
AATCGGGTGAGTCAAAAGGCTAACCATTTGAAGTCACTGCACGATGAAGC
ACAATTCAGTGTCGCTCAAACCAATACGTGATAATAATGAAGAATTACGA
GTAGCTATTTTTTTACCTTAATCATTTTGTGACTTGGTTTTGATTGAGGG
TTTCTGAATAGCAAATTCAAAATATTGAAATAGATCACCGACGTCGGGCC
CTTCAGGCATATTTTCCTGACACGTTTACTCTTAGGTGCCAAATAAACGG
GGATGGGGGGTGTTGGA
Run BLAST on NCBI

protein sequence of TCONS_00040851-protein

>TCONS_00040851-protein ID=TCONS_00040851-protein|Name=TCONS_00040851-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MEVLRKSDRLKALLTNKGLYIVRSGPPSLENIDLHVEYSLFVDAVPIVEG
NNRHNLEIYYYPEKPRIGMMDRQQRYPIRCDGENQVANRVSQKANHLKSL
HDEAQFSVAQTNT
Run BLAST on NCBI

transcript from alignment at sc0002594:1909..3805-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040851 ID=TCONS_00040851|Name=TCONS_00040851|organism=Clytia hemisphaerica|type=transcript|length=1897bp|location=Sequence derived from alignment at sc0002594:1909..3805- (Clytia hemisphaerica)
CAAAAATATTGACATTAAGTATGATTTCTGTAAGTTTTATTACACCGAAT
ATTTTAATTATGCTGAATGAGACGCTTTTAGTATGAATAGATAAAACTTG
TCAGTAGGAAAAAATTAGGAAGGACAGTTTCAGAGGTATAAATCTGATCA
ATTATTCTATTGTCTTTATGTGGACAAAATGACTAATTTCGACAGAAATA
GTGATCTGATGATTAAATGCAAAGCTCCACAAACCATTTTAAAAAGATTC
TTCAAAAGACTGGTTACTTCCTAATTATTTTGATGCTGGTAATACAAAAG
GATAGAAATTGACACCATAATCAAGCTCCAAGAGCCTCGAAATGGTTGTT
TTACGCATTGGGCACGTGGCTCTAATTAAAGATTACACAGGGGTGAGGCT
ACTCTTCAATACGATATATTAAAATGATAAGGAGATTAGAAAAAGGGAAA
AAAATCGATAACCCAAATTCATCTGGTCGCTATTTCTGGTTGATGTTTAG
AAACTAGCCTTTCTCATGAAAAATGATTAATTAAATCTCTTACCTTTTTC
ATAGTAAATTTTCATCTTCATTCTTTTCTACAAGTTTCCGTACTCAAAGC
TTTCTTTCCAAAAGTTTTTTCAACATTCATGCTTGTGCATCAATTGGTCA
ATTTGGCTCATTAAAACCGTCATTTTAAGTTTTGACCAGTCAGATTTATA
AATCGTTTTATTATACCATTTAGAGTATGTACAAACTTTCAAGACGTCCT
TTATAATTACCAATTTAAAGAAAAAGGAGACTTTGTTGTCTGTATAAGAT
TTATTTTATTGACGTTTAGAACATGTCTGAACCGGGTGTTGAACATTTCT
TGATCATTTTCCAATTTCATGTATTTTATAGGTATGTAGCGATGGAAGTG
CTGCGGAAATCTGATCGCTTGAAAGCCTTGCTCACAAACAAAGGATTGTA
CATCGTGCGTTCCGGTCCGCCAAGTTTGGAAAATATTGATCTCCATGTGG
AATATTCTCTCTTTGTGGACGCCGTACCCATAGTTGAAGGTAAAGCGAAC
TTATAGTGTGCGCTATTTCGAGTAGCCATACCGTTGTTGTCACAAAATTA
AGTACGGATATACTAGGATCAATTCAAAAGTGATTCTCACGACGAAAAAC
CTTTTAAATTGTGTTTTTTTTTCAGGCAATAATCGGCACAATCTGGAGAT
CTATTACTATCCGGAGAAGCCACGCATCGGTATGATGGACCGTCAGCAGA
GATATCCTATCAGATGCGATGGTGAAAACCAGGTGGCTAATCGGGTAAGT
TTCCCTCTCTCTCATTTGACTTGCTCACTTAGAAAGTAATAGTCGCTAAG
CATGAAGCTCGAGCTTGACTTTAACAACATTCTTTTTGGTTCCTATTTTC
GTTTCGAGAATCTTGTCCTAAAAAGTGTTGAATAAGACCAAAGCCCCAAA
TATTTTCTGATAAAAAATGCATTTTGATAGAATCGCTTCTTTCATCTTCA
TAGGCAAACTCATATATCCTAGACCAGAGTAGTAAAACCACGTATTTGTA
CGAGTTTATCAAGTTTATATTCAGTATATTAAGAAAAACGTTTTTCTTAC
CATCATGTTTCACTTCGAGCTCTTTTGTTTTTGTAGGTGAGTCAAAAGGC
TAACCATTTGAAGTCACTGCACGATGAAGCACAATTCAGTGTCGCTCAAA
CCAATACGTGATAATAATGAAGAATTACGAGTAGCTATTTTTTTACCTTA
ATCATTTTGTGACTTGGTTTTGATTGAGGGTTTCTGAATAGCAAATTCAA
AATATTGAAATAGATCACCGACGTCGGGCCCTTCAGGCATATTTTCCTGA
CACGTTTACTCTTAGGTGCCAAATAAACGGGGATGGGGGGTGTTGGA

Coding sequence (CDS) from alignment at sc0002594:1909..3805-

>TCONS_00040851 ID=TCONS_00040851|Name=TCONS_00040851|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0002594:1909..3805- (Clytia hemisphaerica)
GTGAGTCAAAAGGCTAACCATTTGAAGTCACTGCACGATGAAGCACAATT
CAGTGTCGCTCAAACCAATACGTGAGCAATAATCGGCACAATCTGGAGAT
CTATTACTATCCGGAGAAGCCACGCATCGGTATGATGGACCGTCAGCAGA
GATATCCTATCAGATGCGATGGTGAAAACCAGGTGGCTAATCGGATGGAA
GTGCTGCGGAAATCTGATCGCTTGAAAGCCTTGCTCACAAACAAAGGATT
GTACATCGTGCGTTCCGGTCCGCCAAGTTTGGAAAATATTGATCTCCATG
TGGAATATTCTCTCTTTGTGGACGCCGTACCCATAGTTGAAGGTGAGTCA
AAAGGCTAACCATTTGAAGTCACTGCACGATGAAGCACAATTCAGTGTCG
CTCAAACCAATACGTGAGCAATAATCGGCACAATCTGGAGATCTATTACT
ATCCGGAGAAGCCACGCATCGGTATGATGGACCGTCAGCAGAGATATCCT
ATCAGATGCGATGGTGAAAACCAGGTGGCTAATCGGATGGAAGTGCTGCG
GAAATCTGATCGCTTGAAAGCCTTGCTCACAAACAAAGGATTGTACATCG
TGCGTTCCGGTCCGCCAAGTTTGGAAAATATTGATCTCCATGTGGAATAT
TCTCTCTTTGTGGACGCCGTACCCATAGTTGAAGGTGAGTCAAAAGGCTA
ACCATTTGAAGTCACTGCACGATGAAGCACAATTCAGTGTCGCTCAAACC
AATACGTGAGCAATAATCGGCACAATCTGGAGATCTATTACTATCCGGAG
AAGCCACGCATCGGTATGATGGACCGTCAGCAGAGATATCCTATCAGATG
CGATGGTGAAAACCAGGTGGCTAATCGGATGGAAGTGCTGCGGAAATCTG
ATCGCTTGAAAGCCTTGCTCACAAACAAAGGATTGTACATCGTGCGTTCC
GGTCCGCCAAGTTTGGAAAATATTGATCTCCATGTGGAATATTCTCTCTT
TGTGGACGCCGTACCCATAGTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024920XLOC_024920Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040851-proteinTCONS_00040851-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040851-exon-sc0002594-1575043694:3777..3805TCONS_00040851-exon-sc0002594-1575043694:3777..3805Clytia hemisphaericaexon
TCONS_00040851-exon-sc0002594-1575043694:2767..2924TCONS_00040851-exon-sc0002594-1575043694:2767..2924Clytia hemisphaericaexon
TCONS_00040851-exon-sc0002594-1575043694:2512..2630TCONS_00040851-exon-sc0002594-1575043694:2512..2630Clytia hemisphaericaexon
TCONS_00040851-exon-sc0002594-1575043694:1909..2169TCONS_00040851-exon-sc0002594-1575043694:1909..2169Clytia hemisphaericaexon
TCONS_00040851-exon-sc0002594-1510915933:3777..3805TCONS_00040851-exon-sc0002594-1510915933:3777..3805Clytia hemisphaericaexon
TCONS_00040851-exon-sc0002594-1510915933:2767..2924TCONS_00040851-exon-sc0002594-1510915933:2767..2924Clytia hemisphaericaexon
TCONS_00040851-exon-sc0002594-1510915933:2512..2630TCONS_00040851-exon-sc0002594-1510915933:2512..2630Clytia hemisphaericaexon
TCONS_00040851-exon-sc0002594-1510915933:1909..2169TCONS_00040851-exon-sc0002594-1510915933:1909..2169Clytia hemisphaericaexon
TCONS_00040851-exon-sc0002594-1491911889:3777..3805TCONS_00040851-exon-sc0002594-1491911889:3777..3805Clytia hemisphaericaexon
TCONS_00040851-exon-sc0002594-1491911889:2767..2924TCONS_00040851-exon-sc0002594-1491911889:2767..2924Clytia hemisphaericaexon
TCONS_00040851-exon-sc0002594-1491911889:2512..2630TCONS_00040851-exon-sc0002594-1491911889:2512..2630Clytia hemisphaericaexon
TCONS_00040851-exon-sc0002594-1491911889:1909..2169TCONS_00040851-exon-sc0002594-1491911889:1909..2169Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002594supercontigsc0002594:1909..3805 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.98766	1.94001	0	0	8.80725	7.27128	4.96398	6.16961	5.06069	3.71893	6.4703	2.96828	4.19282	3.55338	1.95718	4.69651	3.38935	4.87996	1.16425	2.53157	2.16992	0.859329	4.28672	3.063	11.2557	11.6544	1.78851	1.75416	5.06774	5.22367
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040851 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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