TCONS_00040845 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040845
Unique NameTCONS_00040845
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length440

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040845 ID=TCONS_00040845|Name=TCONS_00040845|organism=Clytia hemisphaerica|type=transcript|length=440bp
ATTTCATTCTACCAGCAACTGTAATTGAGTCTTCTGGCAGTAAACGACCA
ATGTGATGAAGAATACCATCCTTTTCAATTGATATCTTCCCAACCTTTTG
TTTGACGAAATGTTTGACCTCTTGAGTAGCCTTCTGAAAGAAATATCTCT
CAGCTTGAGATATCTCCTCATTTGTAAGGATTATGTGTGGTTTAATTGAA
GAATTGATCTTTTTTATCCCTTTAGTGCGACAAAGTTTGATAAAACGTAA
CATTATTGCGAAGACACGCACAACTTTGGTGAAAGAATGGCGATTTGGGT
AAACCACATAATTGGAGAACTTGTATCTTTGTTGCGTTTTGTCGAGAAAC
TCATCAGTGATTAGTTGATTGTGATAGACAGAATGAGTTGAAGGAATCTT
GGCTTCACGATTAGCTTGTTCCAATTCTACCTGACTGAGC
Run BLAST on NCBI

protein sequence of TCONS_00040845-protein

>TCONS_00040845-protein ID=TCONS_00040845-protein|Name=TCONS_00040845-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
LSQVELEQANREAKIPSTHSVYHNQLITDEFLDKTQQRYKFSNYVVYPNR
HSFTKVVRVFAIMLRFIKLCRTKGIKKINSSIKPHIILTNEEISQAERYF
FQKATQEVKHFVKQKVGKISIEKDGILHHIGRLLPEDSITVAGRMK
Run BLAST on NCBI

transcript from alignment at sc0002593:11612..12051

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040845 ID=TCONS_00040845|Name=TCONS_00040845|organism=Clytia hemisphaerica|type=transcript|length=440bp|location=Sequence derived from alignment at sc0002593:11612..12051 (Clytia hemisphaerica)
GCTCAGTCAGGTAGAATTGGAACAAGCTAATCGTGAAGCCAAGATTCCTT
CAACTCATTCTGTCTATCACAATCAACTAATCACTGATGAGTTTCTCGAC
AAAACGCAACAAAGATACAAGTTCTCCAATTATGTGGTTTACCCAAATCG
CCATTCTTTCACCAAAGTTGTGCGTGTCTTCGCAATAATGTTACGTTTTA
TCAAACTTTGTCGCACTAAAGGGATAAAAAAGATCAATTCTTCAATTAAA
CCACACATAATCCTTACAAATGAGGAGATATCTCAAGCTGAGAGATATTT
CTTTCAGAAGGCTACTCAAGAGGTCAAACATTTCGTCAAACAAAAGGTTG
GGAAGATATCAATTGAAAAGGATGGTATTCTTCATCACATTGGTCGTTTA
CTGCCAGAAGACTCAATTACAGTTGCTGGTAGAATGAAAT

Coding sequence (CDS) from alignment at sc0002593:11612..12051

>TCONS_00040845 ID=TCONS_00040845|Name=TCONS_00040845|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at sc0002593:11612..12051 (Clytia hemisphaerica)
CTCAGTCAGGTAGAATTGGAACAAGCTAATCGTGAAGCCAAGATTCCTTC
AACTCATTCTGTCTATCACAATCAACTAATCACTGATGAGTTTCTCGACA
AAACGCAACAAAGATACAAGTTCTCCAATTATGTGGTTTACCCAAATCGC
CATTCTTTCACCAAAGTTGTGCGTGTCTTCGCAATAATGTTACGTTTTAT
CAAACTTTGTCGCACTAAAGGGATAAAAAAGATCAATTCTTCAATTAAAC
CACACATAATCCTTACAAATGAGGAGATATCTCAAGCTGAGAGATATTTC
TTTCAGAAGGCTACTCAAGAGGTCAAACATTTCGTCAAACAAAAGGTTGG
GAAGATATCAATTGAAAAGGATGGTATTCTTCATCACATTGGTCGTTTAC
TGCCAGAAGACTCAATTACAGTTGCTGGTAGAATGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024915XLOC_024915Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040845-proteinTCONS_00040845-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040845-exon-sc0002593-1491911889:11612..12051TCONS_00040845-exon-sc0002593-1491911889:11612..12051Clytia hemisphaericaexon
TCONS_00040845-exon-sc0002593-1510915933:11612..12051TCONS_00040845-exon-sc0002593-1510915933:11612..12051Clytia hemisphaericaexon
TCONS_00040845-exon-sc0002593-1575043694:11612..12051TCONS_00040845-exon-sc0002593-1575043694:11612..12051Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002593supercontigsc0002593:11612..12051 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.767917	1.19814	1.04337	0.850645	2.89962	1.96399	1.97456	0.554567	0.905952	0	0.622402	0.818285	0.715004	0.235851	0	0.0935893	0	0.118173	0	0.341685	0	0.434578	0	0.160096	0.824478	0.588662	0	0	0.170465	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040845 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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