TCONS_00040842 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040842
Unique NameTCONS_00040842
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040842 ID=TCONS_00040842|Name=TCONS_00040842|organism=Clytia hemisphaerica|type=transcript|length=497bp
CAAATGGTTACCAGAAGCAGTCAGCATACGACATACAAATCAAATCGTGT
TAGAAGCAGAAAACACCCAAAACAACGGAGTCAAAATCACTCAAGAACAA
CTTAGACAGTACTCACAAAGACTTGCCACCACCTTGCCCAACAAGTTCTG
GCAACAAGAAGACTTAACCGAGCTAGAAAAAACCCGGTTTATAGAAATGA
TCACGCAGAGACCAGGAAAGACTACGCGAGCCAAGCTCAACCGTCCTAAT
TGGGAAATCATCACGGATCCAGAAAAAGGTTACTACCTTAACGGCGAANC
CAAGCTCAACCGTCCTAATTGGGAAATCATCACGGACCCAGAAGAAGGTT
ACTACCTTAACGGCGAGATGACAACCAAGACCTGGCCTTGCGCCCTGACA
CCAACAAAGTTCCAAACAATGCTACACACACAAGATCGAGTATGTCGCCC
AAAAACCGACGTATGGAACATAACGTTTATCAGAGCAGACAAAGAAC
Run BLAST on NCBI

protein sequence of TCONS_00040842-protein

>TCONS_00040842-protein ID=TCONS_00040842-protein|Name=TCONS_00040842-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
KWLPEAVSIRHTNQIVLEAENTQNNGVKITQEQLRQYSQRLATTLPNKFW
QQEDLTELEKTRFIEMITQRPGKTTRAKLNRPNWEIITDPEKGYYLNGEX
KLNRPNWEIITDPEEGYYLNGEMTTKTWPCALTPTKFQTMLHTQDRVCRP
KTDVWNITFIRADKE
Run BLAST on NCBI

transcript from alignment at sc0002591:23917..24413

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040842 ID=TCONS_00040842|Name=TCONS_00040842|organism=Clytia hemisphaerica|type=transcript|length=497bp|location=Sequence derived from alignment at sc0002591:23917..24413 (Clytia hemisphaerica)
GTTCTTTGTCTGCTCTGATAAACGTTATGTTCCATACGTCGGTTTTTGGG
CGACATACTCGATCTTGTGTGTGTAGCATTGTTTGGAACTTTGTTGGTGT
CAGGGCGCAAGGCCAGGTCTTGGTTGTCATCTCGCCGTTAAGGTAGTAAC
CTTCTTCTGGGTCCGTGATGATTTCCCAATTAGGACGGTTGAGCTTGGNT
TCGCCGTTAAGGTAGTAACCTTTTTCTGGATCCGTGATGATTTCCCAATT
AGGACGGTTGAGCTTGGCTCGCGTAGTCTTTCCTGGTCTCTGCGTGATCA
TTTCTATAAACCGGGTTTTTTCTAGCTCGGTTAAGTCTTCTTGTTGCCAG
AACTTGTTGGGCAAGGTGGTGGCAAGTCTTTGTGAGTACTGTCTAAGTTG
TTCTTGAGTGATTTTGACTCCGTTGTTTTGGGTGTTTTCTGCTTCTAACA
CGATTTGATTTGTATGTCGTATGCTGACTGCTTCTGGTAACCATTTG

Coding sequence (CDS) from alignment at sc0002591:23917..24413

>TCONS_00040842 ID=TCONS_00040842|Name=TCONS_00040842|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at sc0002591:23917..24413 (Clytia hemisphaerica)
TTCTTTGTCTGCTCTGATAAACGTTATGTTCCATACGTCGGTTTTTGGGC
GACATACTCGATCTTGTGTGTGTAGCATTGTTTGGAACTTTGTTGGTGTC
AGGGCGCAAGGCCAGGTCTTGGTTGTCATCTCGCCGTTAAGGTAGTAACC
TTCTTCTGGGTCCGTGATGATTTCCCAATTAGGACGGTTGAGCTTGGNTT
CGCCGTTAAGGTAGTAACCTTTTTCTGGATCCGTGATGATTTCCCAATTA
GGACGGTTGAGCTTGGCTCGCGTAGTCTTTCCTGGTCTCTGCGTGATCAT
TTCTATAAACCGGGTTTTTTCTAGCTCGGTTAAGTCTTCTTGTTGCCAGA
ACTTGTTGGGCAAGGTGGTGGCAAGTCTTTGTGAGTACTGTCTAAGTTGT
TCTTGAGTGATTTTGACTCCGTTGTTTTGGGTGTTTTCTGCTTCTAACAC
GATTTGATTTGTATGTCGTATGCTGACTGCTTCTGGTAACCATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024912XLOC_024912Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040842-proteinTCONS_00040842-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040842-exon-sc0002591-1491911889:23917..24413TCONS_00040842-exon-sc0002591-1491911889:23917..24413Clytia hemisphaericaexon
TCONS_00040842-exon-sc0002591-1510915933:23917..24413TCONS_00040842-exon-sc0002591-1510915933:23917..24413Clytia hemisphaericaexon
TCONS_00040842-exon-sc0002591-1575043694:23917..24413TCONS_00040842-exon-sc0002591-1575043694:23917..24413Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002591supercontigsc0002591:23917..24413 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.615933	0.600632	0.418435	0	0.996744	0.787641	0.791879	0.296539	0.103807	0.128582	0.124805	0.328166	0.0819275	0.34033	0.209848	0.525465	0.739806	0.189569	0.2619	0.548119	1.07193	0.87142	0.42373	0.385232	0	0.118039	1.01348	0.540806	0.273455	1.25373
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top