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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040838 ID=TCONS_00040838|Name=TCONS_00040838|organism=Clytia hemisphaerica|type=transcript|length=1498bp
AAACATGTCGATCAAATTTCAGTTCGTCGAACTTGTTTCCACTCTGTTGA
TTGTGATGGGAGCTTCATTATCCAGCAGCCAAAGTTATTGTTTGCAAGAG
ACGCAAATCAGTATTTTCCTTGATTTGTTCGATTACAGAGATTTTGAGGG
CTACATCGGATCTGGATCTCTCCAAAAACAAGTGCTGAGTTTTCTGAAAA
TGACCGTGAAAAACGTTATACGTGACTCGTGTTATGAGGCGAGGTTATAC
AATCCGTCAGGTAGAAAATTCATTCAACTTGAAAAGTACAGCAGTGATTC
GTCTTTTGATATAGTTTTTCAAGACATGAAAGGCGTAGAAAATGGCCAAA
TGGAGGAGTTCGTCGACGGGTATCGATCCACCGTCGATAAAAAAGAGACC
ATTCTTTATTTCAGAGATCAACTAGGCATGAGAATACGACCAGAGCAGCA
AGCTTGGACCAAGCTAGAGAAACTTTCGAAACTCGAAAATACTCATGTAA
TAATAGCTTGTTCGGTACATGCAGAATATGAGGATATGTGGGAATATCTA
TTACCAGAAATGGAATGGCTTTCACCTCATAGACTAATCTTCATCTCATC
ACCAATCGCCATTAGACAAACCGAGCTTCCCATTTGCTTCAAAAGTATAT
ACGACTTgttaaaaaactcaaatttcaaTCGTTTTAGCTATAACAACGTC
ATTCGAGCCACTAATCAAAAATTCCCGAAATCAATTAAAGATGTGAAATT
GGTATTTCTAACCAATCAATTTTTACACAACCCTCCTCGGATCGCTGACC
AACATCAGCGTTACGAAGAAATGCTGGGAGGAATGGACGCTATGATTCAA
CTTATGACACTTTTAAAGCACAAACTCCAGATTAATGGATAAGTATATGC
TCAATTTCCTTATAGGGGAGAAAGTCAACTTGGTCGAATACCTGGACTAC
GTTCATTGTTCAATCAACTTGGACTGAAGATTGGAGAGGACCGTGGACAT
ACCACAAATGTTGTTTATATTACTGGCTTCAAATACGCTGACGAATACTC
GTTTTCTGCGCCCCTGATAAGAATAGTACATTCTCAAACCGATGTGGAGA
GCTTAAAGAGCTTCAATCAAGATAAAAGAAGTTATTTGATATTCAAAAAC
GAGGATACACAGACAGATAAATTCATAGAGGCTTTAATGAAAGCGATAGT
CAATGCTTGTAGTGAGGTCTGTAaccacaaaaatacttcagatggtgatg
tTGTGAACCCTTAGAGAGTCCAAAACTTAATTTTAGGCAGTAACACCAAA
TTATgtcacctggccacctgccagatgacgtcatcaggtggctgaacaaa
aacattttttttttaatatattcaaaatctgatggtggaAACAGCATGAA
ATTCTGATCAAAATTAATGTATAAAaccaagaaagttttaaaagagaAGG
AATAACAATGATCCTCTTTCCTTTGAGTGATCCTCAGCACATTAACAC Run BLAST on NCBI protein sequence of TCONS_00040838-protein >TCONS_00040838-protein ID=TCONS_00040838-protein|Name=TCONS_00040838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
NMSIKFQFVELVSTLLIVMGASLSSSQSYCLQETQISIFLDLFDYRDFEG
YIGSGSLQKQVLSFLKMTVKNVIRDSCYEARLYNPSGRKFIQLEKYSSDS
SFDIVFQDMKGVENGQMEEFVDGYRSTVDKKETILYFRDQLGMRIRPEQQ
AWTKLEKLSKLENTHVIIACSVHAEYEDMWEYLLPEMEWLSPHRLIFISS
PIAIRQTELPICFKSIYDLLKNSNFNRFSYNNVIRATNQKFPKSIKDVKL
VFLTNQFLHNPPRIADQHQRYEEMLGGMDAMIQLMTLLKHKLQING Run BLAST on NCBI transcript from alignment at sc0002590:9259..10756 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040838 ID=TCONS_00040838|Name=TCONS_00040838|organism=Clytia hemisphaerica|type=transcript|length=1498bp|location=Sequence derived from alignment at sc0002590:9259..10756 (Clytia hemisphaerica)
GTGTTAATGTGCTGAGGATCACTCAAAGGAAAGAGGATCATTGTTATTCC
TtctcttttaaaactttcttggtTTTATACATTAATTTTGATCAGAATTT
CATGCTGTTtccaccatcagattttgaatatattaaaaaaaaaatgtttt
tgttcagccacctgatgacgtcatctggcaggtggccaggtgacATAATT
TGGTGTTACTGCCTAAAATTAAGTTTTGGACTCTCTAAGGGTTCACAaca
tcaccatctgaagtatttttgtggtTACAGACCTCACTACAAGCATTGAC
TATCGCTTTCATTAAAGCCTCTATGAATTTATCTGTCTGTGTATCCTCGT
TTTTGAATATCAAATAACTTCTTTTATCTTGATTGAAGCTCTTTAAGCTC
TCCACATCGGTTTGAGAATGTACTATTCTTATCAGGGGCGCAGAAAACGA
GTATTCGTCAGCGTATTTGAAGCCAGTAATATAAACAACATTTGTGGTAT
GTCCACGGTCCTCTCCAATCTTCAGTCCAAGTTGATTGAACAATGAACGT
AGTCCAGGTATTCGACCAAGTTGACTTTCTCCCCTATAAGGAAATTGAGC
ATATACTTATCCATTAATCTGGAGTTTGTGCTTTAAAAGTGTCATAAGTT
GAATCATAGCGTCCATTCCTCCCAGCATTTCTTCGTAACGCTGATGTTGG
TCAGCGATCCGAGGAGGGTTGTGTAAAAATTGATTGGTTAGAAATACCAA
TTTCACATCTTTAATTGATTTCGGGAATTTTTGATTAGTGGCTCGAATGA
CGTTGTTATAGCTAAAACGAttgaaatttgagttttttaacAAGTCGTAT
ATACTTTTGAAGCAAATGGGAAGCTCGGTTTGTCTAATGGCGATTGGTGA
TGAGATGAAGATTAGTCTATGAGGTGAAAGCCATTCCATTTCTGGTAATA
GATATTCCCACATATCCTCATATTCTGCATGTACCGAACAAGCTATTATT
ACATGAGTATTTTCGAGTTTCGAAAGTTTCTCTAGCTTGGTCCAAGCTTG
CTGCTCTGGTCGTATTCTCATGCCTAGTTGATCTCTGAAATAAAGAATGG
TCTCTTTTTTATCGACGGTGGATCGATACCCGTCGACGAACTCCTCCATT
TGGCCATTTTCTACGCCTTTCATGTCTTGAAAAACTATATCAAAAGACGA
ATCACTGCTGTACTTTTCAAGTTGAATGAATTTTCTACCTGACGGATTGT
ATAACCTCGCCTCATAACACGAGTCACGTATAACGTTTTTCACGGTCATT
TTCAGAAAACTCAGCACTTGTTTTTGGAGAGATCCAGATCCGATGTAGCC
CTCAAAATCTCTGTAATCGAACAAATCAAGGAAAATACTGATTTGCGTCT
CTTGCAAACAATAACTTTGGCTGCTGGATAATGAAGCTCCCATCACAATC
AACAGAGTGGAAACAAGTTCGACGAACTGAAATTTGATCGACATGTTT Coding sequence (CDS) from alignment at sc0002590:9259..10756 >TCONS_00040838 ID=TCONS_00040838|Name=TCONS_00040838|organism=Clytia hemisphaerica|type=CDS|length=891bp|location=Sequence derived from alignment at sc0002590:9259..10756 (Clytia hemisphaerica)
TTATCCATTAATCTGGAGTTTGTGCTTTAAAAGTGTCATAAGTTGAATCA
TAGCGTCCATTCCTCCCAGCATTTCTTCGTAACGCTGATGTTGGTCAGCG
ATCCGAGGAGGGTTGTGTAAAAATTGATTGGTTAGAAATACCAATTTCAC
ATCTTTAATTGATTTCGGGAATTTTTGATTAGTGGCTCGAATGACGTTGT
TATAGCTAAAACGAttgaaatttgagttttttaacAAGTCGTATATACTT
TTGAAGCAAATGGGAAGCTCGGTTTGTCTAATGGCGATTGGTGATGAGAT
GAAGATTAGTCTATGAGGTGAAAGCCATTCCATTTCTGGTAATAGATATT
CCCACATATCCTCATATTCTGCATGTACCGAACAAGCTATTATTACATGA
GTATTTTCGAGTTTCGAAAGTTTCTCTAGCTTGGTCCAAGCTTGCTGCTC
TGGTCGTATTCTCATGCCTAGTTGATCTCTGAAATAAAGAATGGTCTCTT
TTTTATCGACGGTGGATCGATACCCGTCGACGAACTCCTCCATTTGGCCA
TTTTCTACGCCTTTCATGTCTTGAAAAACTATATCAAAAGACGAATCACT
GCTGTACTTTTCAAGTTGAATGAATTTTCTACCTGACGGATTGTATAACC
TCGCCTCATAACACGAGTCACGTATAACGTTTTTCACGGTCATTTTCAGA
AAACTCAGCACTTGTTTTTGGAGAGATCCAGATCCGATGTAGCCCTCAAA
ATCTCTGTAATCGAACAAATCAAGGAAAATACTGATTTGCGTCTCTTGCA
AACAATAACTTTGGCTGCTGGATAATGAAGCTCCCATCACAATCAACAGA
GTGGAAACAAGTTCGACGAACTGAAATTTGATCGACATGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040838-exon-sc0002590-1491911889:9259..10756 | TCONS_00040838-exon-sc0002590-1491911889:9259..10756 | Clytia hemisphaerica | exon |
| TCONS_00040838-exon-sc0002590-1510915933:9259..10756 | TCONS_00040838-exon-sc0002590-1510915933:9259..10756 | Clytia hemisphaerica | exon |
| TCONS_00040838-exon-sc0002590-1575043694:9259..10756 | TCONS_00040838-exon-sc0002590-1575043694:9259..10756 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002590 | supercontig | sc0002590:9259..10756 . |
Blast
The following BLAST results are available for this feature:
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