TCONS_00040836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040836
Unique NameTCONS_00040836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040836 ID=TCONS_00040836|Name=TCONS_00040836|organism=Clytia hemisphaerica|type=transcript|length=363bp
TTTCGACTTGCCAATTGATATGATCAAGGATTTTCCTGTTGATCCTATGC
ATTTAGTATACCTTGGTGTAACGAGACGTCTCCTATATTATCTCAAAGGC
TcctttcgaaaaattaaagATGGAAAATTGTCATCCGCTTACCTGAAAGC
AATTAATCAGACGTTGGACAATTTGAAATTACCATCTGAATTCGCAATGC
AGCCAAGAAGTATTTCCGATCTTTACAGATGGAAAGCAACAgaattcaaa
tcgtttttgCTTTATACTGGCATGGTTGTTTTCCGTCCTTATTTTTCAGC
TGGAGCGTGGAAACATTATCTATGTTTTTCTGTGGCAATTCGGTTGCTGA
GTGAAGAAAGTGA
Run BLAST on NCBI

protein sequence of TCONS_00040836-protein

>TCONS_00040836-protein ID=TCONS_00040836-protein|Name=TCONS_00040836-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
FDLPIDMIKDFPVDPMHLVYLGVTRRLLYYLKGSFRKIKDGKLSSAYLKA
INQTLDNLKLPSEFAMQPRSISDLYRWKATEFKSFLLYTGMVVFRPYFSA
GAWKHYLCFSVAIRLLSEES
Run BLAST on NCBI

transcript from alignment at sc0002586:17096..17458

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040836 ID=TCONS_00040836|Name=TCONS_00040836|organism=Clytia hemisphaerica|type=transcript|length=363bp|location=Sequence derived from alignment at sc0002586:17096..17458 (Clytia hemisphaerica)
TCACTTTCTTCACTCAGCAACCGAATTGCCACAGAAAAACATAGATAATG
TTTCCACGCTCCAGCTGAAAAATAAGGACGGAAAACAACCATGCCAGTAT
AAAGcaaaaacgatttgaattcTGTTGCTTTCCATCTGTAAAGATCGGAA
ATACTTCTTGGCTGCATTGCGAATTCAGATGGTAATTTCAAATTGTCCAA
CGTCTGATTAATTGCTTTCAGGTAAGCGGATGACAATTTTCCATctttaa
tttttcgaaaggAGCCTTTGAGATAATATAGGAGACGTCTCGTTACACCA
AGGTATACTAAATGCATAGGATCAACAGGAAAATCCTTGATCATATCAAT
TGGCAAGTCGAAA

Coding sequence (CDS) from alignment at sc0002586:17096..17458

>TCONS_00040836 ID=TCONS_00040836|Name=TCONS_00040836|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0002586:17096..17458 (Clytia hemisphaerica)
ACTTTCTTCACTCAGCAACCGAATTGCCACAGAAAAACATAGATAATGTT
TCCACGCTCCAGCTGAAAAATAAGGACGGAAAACAACCATGCCAGTATAA
AGcaaaaacgatttgaattcTGTTGCTTTCCATCTGTAAAGATCGGAAAT
ACTTCTTGGCTGCATTGCGAATTCAGATGGTAATTTCAAATTGTCCAACG
TCTGATTAATTGCTTTCAGGTAAGCGGATGACAATTTTCCATctttaatt
tttcgaaaggAGCCTTTGAGATAATATAGGAGACGTCTCGTTACACCAAG
GTATACTAAATGCATAGGATCAACAGGAAAATCCTTGATCATATCAATTG
GCAAGTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024906XLOC_024906Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040836-proteinTCONS_00040836-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040836-exon-sc0002586-1491911889:17096..17458TCONS_00040836-exon-sc0002586-1491911889:17096..17458Clytia hemisphaericaexon
TCONS_00040836-exon-sc0002586-1510915933:17096..17458TCONS_00040836-exon-sc0002586-1510915933:17096..17458Clytia hemisphaericaexon
TCONS_00040836-exon-sc0002586-1575043694:17096..17458TCONS_00040836-exon-sc0002586-1575043694:17096..17458Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002586supercontigsc0002586:17096..17458 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.260842	1.02077	1.02507	0.981993	0.592367	0	0.194133	0.480929	0	0.460285	0.30643	0.477346	0.261629	0.140384	0.345883	0.354519	0	0.256264	0	0.325934	0	0	0	0.220748	0	0	0	0.260516
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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