TCONS_00040835 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040835
Unique NameTCONS_00040835
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length374

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040835 ID=TCONS_00040835|Name=TCONS_00040835|organism=Clytia hemisphaerica|type=transcript|length=374bp
cgtggaggtgaaAGCGACACATTCCCGTACCCCTATTACAGATATGATTG
TTTTGAGGCCTCAATTTCAGGTTCGCTTTAAAGTCTAAGTACAGATGAAT
TGAAGTTGATATATTAATTTTGCTTTATGAgtttataaaaatcaaacttt
gcaAAACTGAATGAATTCGAGGGGTGAAGTTGATTGACAGCCAGAACGGT
TGATTGAAAGCCGGGACGATTGATTGACAGGTAAAGATAGAAGAATTCCT
TACTTTTTATGTAGTGGACAGGGTTTGATTTAACTTTTCAAAAGTGATTC
GTgaaaaaattccttaaaaaacaaacttcaagtAAAATAGAACTTAATTT
TGTAGCTTTGGAGATCGTTTTTCT
Run BLAST on NCBI

transcript from alignment at sc0002585:11418..11791

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040835 ID=TCONS_00040835|Name=TCONS_00040835|organism=Clytia hemisphaerica|type=transcript|length=374bp|location=Sequence derived from alignment at sc0002585:11418..11791 (Clytia hemisphaerica)
AGAAAAACGATCTCCAAAGCTACAAAATTAAGTTCTATTTTacttgaagt
ttgttttttaaggaattttttcACGAATCACTTTTGAAAAGTTAAATCAA
ACCCTGTCCACTACATAAAAAGTAAGGAATTCTTCTATCTTTACCTGTCA
ATCAATCGTCCCGGCTTTCAATCAACCGTTCTGGCTGTCAATCAACTTCA
CCCCTCGAATTCATTCAGTTTtgcaaagtttgatttttataaacTCATAA
AGCAAAATTAATATATCAACTTCAATTCATCTGTACTTAGACTTTAAAGC
GAACCTGAAATTGAGGCCTCAAAACAATCATATCTGTAATAGGGGTACGG
GAATGTGTCGCTttcacctccacg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024905XLOC_024905Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040835-exon-sc0002585-1491911889:11418..11791TCONS_00040835-exon-sc0002585-1491911889:11418..11791Clytia hemisphaericaexon
TCONS_00040835-exon-sc0002585-1510915933:11418..11791TCONS_00040835-exon-sc0002585-1510915933:11418..11791Clytia hemisphaericaexon
TCONS_00040835-exon-sc0002585-1575043694:11418..11791TCONS_00040835-exon-sc0002585-1575043694:11418..11791Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002585supercontigsc0002585:11418..11791 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.953052	0.841557	0.730358	0	0.00520605	0.599889	0.775507	0.747325	0.259235	0.566877	0.217841	1.40364	0.143001	0.148508	0	0.150848	0.232615	0.204887	0	0.310902	0.479716	0.304205	0.246534	0	0.417124	1.32837	0.429542	0.376558	0.739144	0.673568
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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