TCONS_00040831 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00040831
Unique Name	TCONS_00040831
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	848

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0002584:13618..15993-
coding sequence from alignment at sc0002584:13618..15993-

transcript sequence

>TCONS_00040831 ID=TCONS_00040831|Name=TCONS_00040831|organism=Clytia hemisphaerica|type=transcript|length=848bp
TCTAGAAATTCCACTGAATTTGGTATTACGTTTCGTGGATGAAGAATGGC
ACTTCATGATGTATCGTCCCCAGGACCCTCGCATTGTTGATCTCAGAAGA
AGAATTATGGAAAACGTGATGGCGTTTTACAGAGACAATAATATCGATAC
TGCTTTTGATTTGAATAATCTTCGAATCGATTTCCACGGTCAATGGAAAG
GAAGTGTAGTGATGAATTTCACAATCATTTACCCTGAGAATCCGTTCGTG
GAagttttcatgatgcaatctgaACTGGAGTCTGGCTCCTTAAAAAACCT
GTCACTTGTCCCACAAAATATTACAAGCAAGAAATTACCACTGGCACCAG
CCAACATCTCCTTATCATCACCACAACCCTTCATTATTAACCTTTCATGG
AAAGAAAACCCTAGTAATAATTACACAGAGCCTAAGAATGACCCTTTCTA
CTTATATTACGTCTTCTATGCGCAAATACACGACGAAGCAAACTACAAGA
TCAACAAATGGATTAATTTCGGAAGTAAAAATACGTCAGTACAGTTACGT
GATTTGGAATCAGGTAGTTTATATGCTGTTCGTATCCTGGCTTCAACTAT
CAAGACGATGGGTTTGAGCACGGAAACTCAAGTCATCCAAGTATATGAAG
GACCACCAAAATCGAAGCCTCAAAACACAACTCATCAATTCATGGATCCA
CGTCAAATTTTCATCAGTTGGGACCACATCCCGAAATCGGAGGTACCGGG
AAAGTTGAGAGGTTACCGTATTATGTACAGAATATACCAAACCAATGAGA
ATGTGACACTTGAAGTATCTGGTAATATCAATCAGAAGTTCATCCCTG

Run BLAST on NCBI

protein sequence of TCONS_00040831-protein

>TCONS_00040831-protein ID=TCONS_00040831-protein|Name=TCONS_00040831-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
LEIPLNLVLRFVDEEWHFMMYRPQDPRIVDLRRRIMENVMAFYRDNNIDT
AFDLNNLRIDFHGQWKGSVVMNFTIIYPENPFVEVFMMQSELESGSLKNL
SLVPQNITSKKLPLAPANISLSSPQPFIINLSWKENPSNNYTEPKNDPFY
LYYVFYAQIHDEANYKINKWINFGSKNTSVQLRDLESGSLYAVRILASTI
KTMGLSTETQVIQVYEGPPKSKPQNTTHQFMDPRQIFISWDHIPKSEVPG
KLRGYRIMYRIYQTNENVTLEVSGNINQKFIP

Run BLAST on NCBI

transcript from alignment at sc0002584:13618..15993-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00040831 ID=TCONS_00040831|Name=TCONS_00040831|organism=Clytia hemisphaerica|type=transcript|length=2376bp|location=Sequence derived from alignment at sc0002584:13618..15993- (Clytia hemisphaerica)
TCTAGAAATTCCACTGAATTTGGTATTACGTTTCGTGGATGAAGAATGGC
ACTTCATGATGTATCGTCCCCAGGACCCTCGCATTGTTGATCTCAGAAGA
AGAATTATGGAAAACGTACGTAAACCTCTATATTTCTGAAAGTTTGTCTC
AATTTGATCTGCACCGGAGACTAAGAAGGTTGCAACTTTTTCATAGAATT
CGATTAGCATAGTGGTTTTGAGCTTGTTGAAAATATACTAAGGAGTGGCA
TATTATCAAATAGAGAAAAATCTAAAAGTTTGGAAAATGAAGATAAAAAA
GAACTCGTTGTTGCCACCGTTTCTTTCACTTTAAAGTGAAATTCTTGCGA
TTTTGACTTTTTCCCTGACTATTTAGTAATACTCAGACCATGTTCGCACG
GGCAACGGCTCCGGTTCGTTCCGAAACAAAATGACGCCGTTCTATTGGTT
GAAAGTGACCTATTGAATGTTACCATAGAATGGCTTCATTTCGTTTCGGA
GCGAATCGAAACCGTAGCGTGTGAACGTGGTCTCATTTTTTGTTTTTGAT
ATTTCTCAGGTGATGGCGTTTTACAGAGACAATAATATCGATACTGCTTT
TGATTTGAATAATCTTCGAATCGATTTCCACGGTCAATGGTAAGTTTGTT
TTATGCTTTTGGTTTAATAACTATGGACTGAATATTTTCAACAAATGTGA
AACTCAGGTGCTGTCAGGGCTGCTAATTTGATTTTTGGGGGTATTCAAAC
TTACAAGATATTTCATCTGTCAAATATTACAAAGAGAACATTCATTCCGA
CATCATTCATGATTCTTTTCATTACCACTCAGGCTTATTTTCATTTCATT
TCATGTTTTCAGGAAAGGAAGTGTAGTGATGAATTTCACAATCATTTACC
CTGAGAATCCGTTCGTGGAAGTTTTCATGATGCAATCTGAACTGGAGTCT
GGCTCCTTAAAAAACCTGTCACTTGTCCCACAAAATATTACAAGCAAGAA
ATGTAATAATCCTTTTTCTTCTCCTCACAACCACCGTCTTTTCTCCACCA
TGATCAAAGATTTTCATTTATGAAAAATCTTGAATTCCGGGGAAACCTGG
TGAAATTTACTTTCTGATAAATGGCAATAAGAAATCCCTTAATCTGAGAA
AAAACTGCAAAATCCGCCTTGAAAATTCTGAGACTACCAAGAAAGCCCCA
AAATAATCCCAGTATCGTTCAATCTCGTGTATGGAGTTTTCTCAAAAAGG
GTGTCTCAAAGGGACGAGAGGGAGTTTTTACAAGCTCTTATTTGATTTGG
TTGGTCGTTAACCAGTGATAAAACAATTTTGTTATTTTTTCTTATTATTT
TCCCATTATTAAAGTATCTTATAAAAACTCCACCTCATGTCTGGTCTCAA
AGAACAAATAAATATTAAAAAAAATTGCTTCAAACCTTTTTTCCATTCTA
TTGCAGTACCACTGGCACCAGCCAACATCTCCTTATCATCACCACAACCC
TTCATTATTAACCTTTCATGGAAAGAAAACCCTAGTAATAATTACACAGA
GCCTAAGAATGACCCTTTCTACTTATATTACGTCTTCTATGCGCAAATAC
ACGACGAAGCAAACTACAAGATCAACAAATGGATTAATTTCGGAAGTAAA
AATACGTCAGTACAGTTACGTGATTTGGAATCAGGTAGTTTATATGCTGT
TCGTATCCTGGCTTCAACTATCAAGACGATGGGTTTGAGCACGGAAACTC
AAGTCATCCAAGTATATGAAGGACGTAAGTATTGTACTTACTCAGCTATG
CAATCATGGTCGAAATATTTTGAGATTTTAGTGTATTTTAACGTTTTTCA
GAATTTAAAGTTCGGGCCGGAATTGCTAATTTAGCACTTCTACTTTCTTT
AATGGAATATTTCAATTTTGGAGGGGTTCAGTGGCTTCTAGGCTATATTC
CAAGCCTTATTGGAGCAAATTTGAGCTTTTGAATCTTGAGATCCTAAGGT
CCTAAAGTTTCAAGTTTAAACTCAGAGTTAAAAACTCTACTTTCCAACTA
TAGTTTAACGCGTTTAAAAATAATTTGAGGTGTTTAAAATTAATGTTTTT
TATTTTAGTAGTTGAATATCACAAGCTTTCTTACTTATTGTACTTATAAA
GCTAAACTCTTGATTTTCTTTCTTTCCATAGCACCAAAATCGAAGCCTCA
AAACACAACTCATCAATTCATGGATCCACGTCAAATTTTCATCAGTTGGG
ACCACATCCCGAAATCGGAGGTACCGGGAAAGTTGAGAGGTTACCGTATT
ATGTACAGAATATACCAAACCAATGAGAATGTGACACTTGAAGTATCTGG
TAATATCAATCAGAAGTTCATCCCTG

Coding sequence (CDS) from alignment at sc0002584:13618..15993-

>TCONS_00040831 ID=TCONS_00040831|Name=TCONS_00040831|organism=Clytia hemisphaerica|type=CDS|length=4230bp|location=Sequence derived from alignment at sc0002584:13618..15993- (Clytia hemisphaerica)
CACCAAAATCGAAGCCTCAAAACACAACTCATCAATTCATGGATCCACGT
CAAATTTTCATCAGTTGGGACCACATCCCGAAATCGGAGGTACCGGGAAA
GTTGAGAGGTTACCGTATTATGTACAGAATATACCAAACCAATGAGAATG
TGACACTTGAAGTATCTGGTAATATCAATCAGAAGTTCATCCCTTACCAC
TGGCACCAGCCAACATCTCCTTATCATCACCACAACCCTTCATTATTAAC
CTTTCATGGAAAGAAAACCCTAGTAATAATTACACAGAGCCTAAGAATGA
CCCTTTCTACTTATATTACGTCTTCTATGCGCAAATACACGACGAAGCAA
ACTACAAGATCAACAAATGGATTAATTTCGGAAGTAAAAATACGTCAGTA
CAGTTACGTGATTTGGAATCAGGTAGTTTATATGCTGTTCGTATCCTGGC
TTCAACTATCAAGACGATGGGTTTGAGCACGGAAACTCAAGTCATCCAAG
TATATGAAGGACGAAAGGAAGTGTAGTGATGAATTTCACAATCATTTACC
CTGAGAATCCGTTCGTGGAAGTTTTCATGATGCAATCTGAACTGGAGTCT
GGCTCCTTAAAAAACCTGTCACTTGTCCCACAAAATATTACAAGCAAGAA
ATGTGATGGCGTTTTACAGAGACAATAATATCGATACTGCTTTTGATTTG
AATAATCTTCGAATCGATTTCCACGGTCAATGCTAGAAATTCCACTGAAT
TTGGTATTACGTTTCGTGGATGAAGAATGGCACTTCATGATGTATCGTCC
CCAGGACCCTCGCATTGTTGATCTCAGAAGAAGAATTATGGAAAACCACC
AAAATCGAAGCCTCAAAACACAACTCATCAATTCATGGATCCACGTCAAA
TTTTCATCAGTTGGGACCACATCCCGAAATCGGAGGTACCGGGAAAGTTG
AGAGGTTACCGTATTATGTACAGAATATACCAAACCAATGAGAATGTGAC
ACTTGAAGTATCTGGTAATATCAATCAGAAGTTCATCCCTTACCACTGGC
ACCAGCCAACATCTCCTTATCATCACCACAACCCTTCATTATTAACCTTT
CATGGAAAGAAAACCCTAGTAATAATTACACAGAGCCTAAGAATGACCCT
TTCTACTTATATTACGTCTTCTATGCGCAAATACACGACGAAGCAAACTA
CAAGATCAACAAATGGATTAATTTCGGAAGTAAAAATACGTCAGTACAGT
TACGTGATTTGGAATCAGGTAGTTTATATGCTGTTCGTATCCTGGCTTCA
ACTATCAAGACGATGGGTTTGAGCACGGAAACTCAAGTCATCCAAGTATA
TGAAGGACGAAAGGAAGTGTAGTGATGAATTTCACAATCATTTACCCTGA
GAATCCGTTCGTGGAAGTTTTCATGATGCAATCTGAACTGGAGTCTGGCT
CCTTAAAAAACCTGTCACTTGTCCCACAAAATATTACAAGCAAGAAATGT
GATGGCGTTTTACAGAGACAATAATATCGATACTGCTTTTGATTTGAATA
ATCTTCGAATCGATTTCCACGGTCAATGCTAGAAATTCCACTGAATTTGG
TATTACGTTTCGTGGATGAAGAATGGCACTTCATGATGTATCGTCCCCAG
GACCCTCGCATTGTTGATCTCAGAAGAAGAATTATGGAAAACCACCAAAA
TCGAAGCCTCAAAACACAACTCATCAATTCATGGATCCACGTCAAATTTT
CATCAGTTGGGACCACATCCCGAAATCGGAGGTACCGGGAAAGTTGAGAG
GTTACCGTATTATGTACAGAATATACCAAACCAATGAGAATGTGACACTT
GAAGTATCTGGTAATATCAATCAGAAGTTCATCCCTTACCACTGGCACCA
GCCAACATCTCCTTATCATCACCACAACCCTTCATTATTAACCTTTCATG
GAAAGAAAACCCTAGTAATAATTACACAGAGCCTAAGAATGACCCTTTCT
ACTTATATTACGTCTTCTATGCGCAAATACACGACGAAGCAAACTACAAG
ATCAACAAATGGATTAATTTCGGAAGTAAAAATACGTCAGTACAGTTACG
TGATTTGGAATCAGGTAGTTTATATGCTGTTCGTATCCTGGCTTCAACTA
TCAAGACGATGGGTTTGAGCACGGAAACTCAAGTCATCCAAGTATATGAA
GGACGAAAGGAAGTGTAGTGATGAATTTCACAATCATTTACCCTGAGAAT
CCGTTCGTGGAAGTTTTCATGATGCAATCTGAACTGGAGTCTGGCTCCTT
AAAAAACCTGTCACTTGTCCCACAAAATATTACAAGCAAGAAATGTGATG
GCGTTTTACAGAGACAATAATATCGATACTGCTTTTGATTTGAATAATCT
TCGAATCGATTTCCACGGTCAATGCTAGAAATTCCACTGAATTTGGTATT
ACGTTTCGTGGATGAAGAATGGCACTTCATGATGTATCGTCCCCAGGACC
CTCGCATTGTTGATCTCAGAAGAAGAATTATGGAAAACCACCAAAATCGA
AGCCTCAAAACACAACTCATCAATTCATGGATCCACGTCAAATTTTCATC
AGTTGGGACCACATCCCGAAATCGGAGGTACCGGGAAAGTTGAGAGGTTA
CCGTATTATGTACAGAATATACCAAACCAATGAGAATGTGACACTTGAAG
TATCTGGTAATATCAATCAGAAGTTCATCCCTTACCACTGGCACCAGCCA
ACATCTCCTTATCATCACCACAACCCTTCATTATTAACCTTTCATGGAAA
GAAAACCCTAGTAATAATTACACAGAGCCTAAGAATGACCCTTTCTACTT
ATATTACGTCTTCTATGCGCAAATACACGACGAAGCAAACTACAAGATCA
ACAAATGGATTAATTTCGGAAGTAAAAATACGTCAGTACAGTTACGTGAT
TTGGAATCAGGTAGTTTATATGCTGTTCGTATCCTGGCTTCAACTATCAA
GACGATGGGTTTGAGCACGGAAACTCAAGTCATCCAAGTATATGAAGGAC
GAAAGGAAGTGTAGTGATGAATTTCACAATCATTTACCCTGAGAATCCGT
TCGTGGAAGTTTTCATGATGCAATCTGAACTGGAGTCTGGCTCCTTAAAA
AACCTGTCACTTGTCCCACAAAATATTACAAGCAAGAAATGTGATGGCGT
TTTACAGAGACAATAATATCGATACTGCTTTTGATTTGAATAATCTTCGA
ATCGATTTCCACGGTCAATGCTAGAAATTCCACTGAATTTGGTATTACGT
TTCGTGGATGAAGAATGGCACTTCATGATGTATCGTCCCCAGGACCCTCG
CATTGTTGATCTCAGAAGAAGAATTATGGAAAACCACCAAAATCGAAGCC
TCAAAACACAACTCATCAATTCATGGATCCACGTCAAATTTTCATCAGTT
GGGACCACATCCCGAAATCGGAGGTACCGGGAAAGTTGAGAGGTTACCGT
ATTATGTACAGAATATACCAAACCAATGAGAATGTGACACTTGAAGTATC
TGGTAATATCAATCAGAAGTTCATCCCTTACCACTGGCACCAGCCAACAT
CTCCTTATCATCACCACAACCCTTCATTATTAACCTTTCATGGAAAGAAA
ACCCTAGTAATAATTACACAGAGCCTAAGAATGACCCTTTCTACTTATAT
TACGTCTTCTATGCGCAAATACACGACGAAGCAAACTACAAGATCAACAA
ATGGATTAATTTCGGAAGTAAAAATACGTCAGTACAGTTACGTGATTTGG
AATCAGGTAGTTTATATGCTGTTCGTATCCTGGCTTCAACTATCAAGACG
ATGGGTTTGAGCACGGAAACTCAAGTCATCCAAGTATATGAAGGACGAAA
GGAAGTGTAGTGATGAATTTCACAATCATTTACCCTGAGAATCCGTTCGT
GGAAGTTTTCATGATGCAATCTGAACTGGAGTCTGGCTCCTTAAAAAACC
TGTCACTTGTCCCACAAAATATTACAAGCAAGAAATGTGATGGCGTTTTA
CAGAGACAATAATATCGATACTGCTTTTGATTTGAATAATCTTCGAATCG
ATTTCCACGGTCAATGCTAGAAATTCCACTGAATTTGGTATTACGTTTCG
TGGATGAAGAATGGCACTTCATGATGTATCGTCCCCAGGACCCTCGCATT
GTTGATCTCAGAAGAAGAATTATGGAAAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_024901	XLOC_024901	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00040831-protein	TCONS_00040831-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002584	supercontig	sc0002584:13618..15993 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.379107	0.979775	0.541125	0.0671552	0	0	0	0.113241	0.172373	0	0.0517238	0	0	0	0	0	0.530421	0.63976	0.0590198	0	5.32265	3.76655	0.722517	2.81075	0.523238	0.705694	0.328096	0.468385	0.145378	0.286833

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR013783	Ig-like_fold
IPR003961	FN3_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00040831 vs. Swiss-Prot (Human)

BLAST of TCONS_00040831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00040831 (transcript) - C. hemisphaerica