TCONS_00040830 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040830
Unique NameTCONS_00040830
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length624

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040830 ID=TCONS_00040830|Name=TCONS_00040830|organism=Clytia hemisphaerica|type=transcript|length=624bp
ATTCCACAGAGCTTTTGGGCAAAGAAAAATATCTGGAAGAGAAATCCATC
ATGATAACCCGAATTTTGAATTACAATACTGGTTATGGGTTTGTTTTATC
CGGAGATCTTATCCGCCTGGAATCGGATTTCCGTGCATACATCACTGGCA
ATCAAGCATACTTGATTTGGTATATCGAGAAAGTACTTGGCAGACTTAAT
CCGACCATGATTGAAACATTGGAAGTGTTATTGATGCCCGAAGAAGCATC
CACCATTCTCCTTCAATTATGTGGTATTTGGGCGGTGGCGGTTTTATTGG
GCGCCTCATTCTCTTTCATCAGAGATACCTTTTGTCaaggaaaatcaaaa
gttcAACCGAGAGGAACCCCTGAACAAAGATATGCTGATGTCAATACAAG
CCTTACAAAAGAAGTGTCTTCCTTCCACCAGAAATTTACTGGCTCTGTTG
AAGAAATTTCCAATCGACAAGACGATGAAAAGATTGAATTAGATCGATTA
CAACGCTGTTATAAATCCTGGAAATATCGAGATAATTTTCATAACATTTT
CAAACTAGAAGCGGACTTAGAATTACACCGCACGAAGAAAAAAGAACGCG
CGGCCGAACTGAAAACTAAGAAAC
Run BLAST on NCBI

protein sequence of TCONS_00040830-protein

>TCONS_00040830-protein ID=TCONS_00040830-protein|Name=TCONS_00040830-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
STELLGKEKYLEEKSIMITRILNYNTGYGFVLSGDLIRLESDFRAYITGN
QAYLIWYIEKVLGRLNPTMIETLEVLLMPEEASTILLQLCGIWAVAVLLG
ASFSFIRDTFCQGKSKVQPRGTPEQRYADVNTSLTKEVSSFHQKFTGSVE
EISNRQDDEKIELDRLQRCYKSWKYRDNFHNIFKLEADLELHRTKKKERA
AELKTKK
Run BLAST on NCBI

transcript from alignment at sc0002584:5632..7000-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040830 ID=TCONS_00040830|Name=TCONS_00040830|organism=Clytia hemisphaerica|type=transcript|length=1369bp|location=Sequence derived from alignment at sc0002584:5632..7000- (Clytia hemisphaerica)
ATTCCACAGAGCTTTTGGGCAAAGAAAAATATCTGGAAGAGAAATCCATC
ATGATAACCCGAATTTTGAATTACAATACTGGTTATGGGTTTGTTTTATC
CGGAGATCTTATCCGCCTGGAATCGGATTTCCGTGCATACATCACTGGCA
ATCAAGCATACTTGATTTGGTATATCGAGAAAGTACTTGGCAGACTTAAT
GTAAGTGGAGCTTTAATCTGCTCATTTTCAAACCTTTCCCCGACATTCTA
ACTGTTAAATTATTTAGCTTTTAAAAGCCTTTTGTAAGGCCTTTCATCGG
CTGAGACTGAGACCTATTCTGCAATAAACGGAATTTTGTACCACAGTCTC
TTTAACTCGAATATCTCCTTAACCAGAACAACTTTTCTCATACCTTTAGT
AATACCTTATAAACCTTACTCCCATAACTCGTTCAAAATCTCCTTAAATC
GAACAAATTTGTGTCAACTCTGTATGTGTTCGATATGGAGACTCAACTGT
ACTTAGCTACTATAAAGTTTCAACTTCCTCTTCTTAGCCGACCATGATTG
AAACATTGGAAGTGTTATTGATGCCCGAAGAAGCATCCACCATTCTCCTT
CAATTATGTGGTATTTGGGCGGTGGCGGTTTTATTGGGCGCCTCATTCTC
TTTCATCAGAGATACCTTTTGTCAAGGAAAATCAAAAGTTCAACCGAGAG
GTAATACATGTTTTCTGAAGTCCGAAAAAAATGAGTTTGAAAGAAAAGAG
ACACTTCTGTGTCACAGACCCGCTGGATCCCCAGACCCCCAAAATTTCGT
ACCCGGTGGAAAAATACCCTGGATTTCAGCCCTACTGGGAAATTCACTTT
GATTTCATCCCCACTCGAAATTCAATGTTTAAAAAATTGCATTCCAAAAC
CATCCCCGCTGGATTTTTTAACCTTGGAACAATAAAATTTCTATCCCCAT
TGGGATTTCAATAGGAATATTTATCCCCATTGAGGAAAAAAGCCCCACCG
GGGCTGTGAGACAGGGGTGTAAAGAGGTTCATGAAACACTAATATAAAGA
GTGCTGAGTGTCGAGTGCTTATAGTCTGTTTATTGTTTGAATGGTTTTCA
TTTGATAGGAACCCCTGAACAAAGATATGCTGATGTCAATACAAGCCTTA
CAAAAGAAGTGTCTTCCTTCCACCAGAAATTTACTGGCTCTGTTGAAGAA
ATTTCCAATCGACAAGACGATGAAAAGATTGAATTAGATCGATTACAACG
CTGTTATAAATCCTGGAAATATCGAGATAATTTTCATAACATTTTCAAAC
TAGAAGCGGACTTAGAATTACACCGCACGAAGAAAAAAGAACGCGCGGCC
GAACTGAAAACTAAGAAAC

Coding sequence (CDS) from alignment at sc0002584:5632..7000-

>TCONS_00040830 ID=TCONS_00040830|Name=TCONS_00040830|organism=Clytia hemisphaerica|type=CDS|length=1863bp|location=Sequence derived from alignment at sc0002584:5632..7000- (Clytia hemisphaerica)
GAACCCCTGAACAAAGATATGCTGATGTCAATACAAGCCTTACAAAAGAA
GTGTCTTCCTTCCACCAGAAATTTACTGGCTCTGTTGAAGAAATTTCCAA
TCGACAAGACGATGAAAAGATTGAATTAGATCGATTACAACGCTGTTATA
AATCCTGGAAATATCGAGATAATTTTCATAACATTTTCAAACTAGAAGCG
GACTTAGAATTACACCGCACGAAGAAAAAAGAACGCGCGGCCGAACTGAA
AACTAAGAAACCGACCATGATTGAAACATTGGAAGTGTTATTGATGCCCG
AAGAAGCATCCACCATTCTCCTTCAATTATGTGGTATTTGGGCGGTGGCG
GTTTTATTGGGCGCCTCATTCTCTTTCATCAGAGATACCTTTTGTCAAGG
AAAATCAAAAGTTCAACCGAGAGTCCACAGAGCTTTTGGGCAAAGAAAAA
TATCTGGAAGAGAAATCCATCATGATAACCCGAATTTTGAATTACAATAC
TGGTTATGGGTTTGTTTTATCCGGAGATCTTATCCGCCTGGAATCGGATT
TCCGTGCATACATCACTGGCAATCAAGCATACTTGATTTGGTATATCGAG
AAAGTACTTGGCAGACTTAATGAACCCCTGAACAAAGATATGCTGATGTC
AATACAAGCCTTACAAAAGAAGTGTCTTCCTTCCACCAGAAATTTACTGG
CTCTGTTGAAGAAATTTCCAATCGACAAGACGATGAAAAGATTGAATTAG
ATCGATTACAACGCTGTTATAAATCCTGGAAATATCGAGATAATTTTCAT
AACATTTTCAAACTAGAAGCGGACTTAGAATTACACCGCACGAAGAAAAA
AGAACGCGCGGCCGAACTGAAAACTAAGAAACCGACCATGATTGAAACAT
TGGAAGTGTTATTGATGCCCGAAGAAGCATCCACCATTCTCCTTCAATTA
TGTGGTATTTGGGCGGTGGCGGTTTTATTGGGCGCCTCATTCTCTTTCAT
CAGAGATACCTTTTGTCAAGGAAAATCAAAAGTTCAACCGAGAGTCCACA
GAGCTTTTGGGCAAAGAAAAATATCTGGAAGAGAAATCCATCATGATAAC
CCGAATTTTGAATTACAATACTGGTTATGGGTTTGTTTTATCCGGAGATC
TTATCCGCCTGGAATCGGATTTCCGTGCATACATCACTGGCAATCAAGCA
TACTTGATTTGGTATATCGAGAAAGTACTTGGCAGACTTAATGAACCCCT
GAACAAAGATATGCTGATGTCAATACAAGCCTTACAAAAGAAGTGTCTTC
CTTCCACCAGAAATTTACTGGCTCTGTTGAAGAAATTTCCAATCGACAAG
ACGATGAAAAGATTGAATTAGATCGATTACAACGCTGTTATAAATCCTGG
AAATATCGAGATAATTTTCATAACATTTTCAAACTAGAAGCGGACTTAGA
ATTACACCGCACGAAGAAAAAAGAACGCGCGGCCGAACTGAAAACTAAGA
AACCGACCATGATTGAAACATTGGAAGTGTTATTGATGCCCGAAGAAGCA
TCCACCATTCTCCTTCAATTATGTGGTATTTGGGCGGTGGCGGTTTTATT
GGGCGCCTCATTCTCTTTCATCAGAGATACCTTTTGTCAAGGAAAATCAA
AAGTTCAACCGAGAGTCCACAGAGCTTTTGGGCAAAGAAAAATATCTGGA
AGAGAAATCCATCATGATAACCCGAATTTTGAATTACAATACTGGTTATG
GGTTTGTTTTATCCGGAGATCTTATCCGCCTGGAATCGGATTTCCGTGCA
TACATCACTGGCAATCAAGCATACTTGATTTGGTATATCGAGAAAGTACT
TGGCAGACTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024900XLOC_024900Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040830-proteinTCONS_00040830-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040830-exon-sc0002584-1575043694:6801..7000TCONS_00040830-exon-sc0002584-1575043694:6801..7000Clytia hemisphaericaexon
TCONS_00040830-exon-sc0002584-1575043694:6301..6463TCONS_00040830-exon-sc0002584-1575043694:6301..6463Clytia hemisphaericaexon
TCONS_00040830-exon-sc0002584-1575043694:5632..5892TCONS_00040830-exon-sc0002584-1575043694:5632..5892Clytia hemisphaericaexon
TCONS_00040830-exon-sc0002584-1510915933:6801..7000TCONS_00040830-exon-sc0002584-1510915933:6801..7000Clytia hemisphaericaexon
TCONS_00040830-exon-sc0002584-1510915933:6301..6463TCONS_00040830-exon-sc0002584-1510915933:6301..6463Clytia hemisphaericaexon
TCONS_00040830-exon-sc0002584-1510915933:5632..5892TCONS_00040830-exon-sc0002584-1510915933:5632..5892Clytia hemisphaericaexon
TCONS_00040830-exon-sc0002584-1491911889:6801..7000TCONS_00040830-exon-sc0002584-1491911889:6801..7000Clytia hemisphaericaexon
TCONS_00040830-exon-sc0002584-1491911889:6301..6463TCONS_00040830-exon-sc0002584-1491911889:6301..6463Clytia hemisphaericaexon
TCONS_00040830-exon-sc0002584-1491911889:5632..5892TCONS_00040830-exon-sc0002584-1491911889:5632..5892Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002584supercontigsc0002584:5632..7000 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.39806	2.15084	1.48723	0.36227	0.392672	0.991483	0.157616	0.144506	0.280662	0	0	0	0	0.0590452	0	0.0768687	1.43213	1.7625	0	0.0784717	6.01008	5.87372	2.3069	3.81602	69.7446	65.482	0.323645	1.32939	0.120107	1.27841
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040830 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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