TCONS_00040829 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040829
Unique NameTCONS_00040829
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length482

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040829 ID=TCONS_00040829|Name=TCONS_00040829|organism=Clytia hemisphaerica|type=transcript|length=482bp
TAGAAATTCCATTATCATAAAAATCTTCATACAGCTAGGGATGGTGGTTt
gttaagatttttaaaaatttccctgTCTCATGTTAAATGGCCTTTGCTTT
GGCAAGAGTGTATTATATAGAAGAGTGTTCAGATATCTACTACAGGGTGG
CTTTgaagaattttaaaaattagatgAACCAAATTTTCACACGTTTTTTG
AGGGGTGTTTAGCAGAATTATATACATCATAAGTCAAAATCACatagttt
ttattgttttaaatatGAATTTCCAGATTTCTGGAGAAAGAATTTTAAGA
GTCTCTGgattttgaacttttcaaagCTGGTAGGTCTGAAATGGTGTCAA
TCAAACTGATCAAAtgccaaaattaattgagaACAATAAACCTTATGCTT
ATTGCCATACCATAGACTTAGTGGGACACAATGTCATGaatataattaaa
aactccgCTGTCTCTAGCATCAAACATTGATA
Run BLAST on NCBI

transcript from alignment at sc0002582:16..497

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040829 ID=TCONS_00040829|Name=TCONS_00040829|organism=Clytia hemisphaerica|type=transcript|length=482bp|location=Sequence derived from alignment at sc0002582:16..497 (Clytia hemisphaerica)
TATCAATGTTTGATGCTAGAGACAGcggagtttttaattatattCATGAC
ATTGTGTCCCACTAAGTCTATGGTATGGCAATAAGCATAAGGTTTATTGT
tctcaattaattttggcaTTTGATCAGTTTGATTGACACCATTTCAGACC
TACCAGctttgaaaagttcaaaatcCAGAGACTCTTAAAATTCTTTCTCC
AGAAATCTGGAAATTCatatttaaaacaataaaaactatGTGATTTTGAC
TTATGATGTATATAATTCTGCTAAACACCCCTCAAAAAACGTGTGAAAAT
TTGGTTcatctaatttttaaaattcttcAAAGCCACCCTGTAGTAGATAT
CTGAACACTCTTCTATATAATACACTCTTGCCAAAGCAAAGGCCATTTAA
CATGAGAcagggaaatttttaaaaatcttaacaAACCACCATCCCTAGCT
GTATGAAGATTTTTATGATAATGGAATTTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024899XLOC_024899Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040829-exon-sc0002582-1491911889:16..497TCONS_00040829-exon-sc0002582-1491911889:16..497Clytia hemisphaericaexon
TCONS_00040829-exon-sc0002582-1510915933:16..497TCONS_00040829-exon-sc0002582-1510915933:16..497Clytia hemisphaericaexon
TCONS_00040829-exon-sc0002582-1575043694:16..497TCONS_00040829-exon-sc0002582-1575043694:16..497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002582supercontigsc0002582:16..497 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.68942	1.64745	0.735709	2.5912	0.350503	0	0	0.312832	0	0	0	0	0	0	0.0737928	0	0.195114	0	0.690726	0	0	0	0.149004	0.135466	0.139527	0.124525	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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