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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040799 ID=TCONS_00040799|Name=TCONS_00040799|organism=Clytia hemisphaerica|type=transcript|length=1342bp
AATTGGTCAATTTATGAAAGTAATTGAGTTTTTGAGAAAACAAGTTTGGT
TAAGTTGGTGGAATGCTTGTGATGTGTtcaagaaattaatttttctacAG
TATATGTTTTCAAATTCACCATAGAGTACCTTGAAGTGTTGAATGGATGT
TAGGGTAATTACCAATATATCCATTCACTCAAAATCGTCAAATTGTGTAA
GAAAAAACCATGGACAAAAAATGGCTTCAAAATCGCCGTCAAACGACCTC
AACATTCATTCTCATGAACATTTCTCTTGGAATTGAACAGTCAATCACAT
TCGCTTCATTATTCATCTACCTCAAAGATGTCTTACACGTCTCTGGTAAT
CGTTTGACCACATTCTACAGCGCTATATCGGGAATTTATTTCCTATCTCA
AATCATATCGTCATTGGCGTTAACCAGAATCTTTGATAAATATCGTCGAC
TTAAGTTAACTTTCTTCATTGTTAACAACTTCACCATTGCTGGTAATGCA
CTGTACACACTTCCATATTCACCCTGGTGTTTACTGGCTGGTCGTCTCAT
CTCTGGTGTTGCAGGATGCATCAAACCAATCATGGTATCCGAATTGACCA
GATCATTTCCTAAAGATGAGCTTTTACCACAAATATCTAGATTCGCATTT
GCTTTTTCAGTTGGTTTCACTTTAGGaccttttgttaattttgtattCCT
CAAAGCTGATTTCCGATTCTTAGGTATACCAATCACTTATGCTAATGGTG
CTGGTTTATTGATAACTTTCTTATTCATCTTGATGCAGATTCTAACTGTG
TTTTTCGTTACCGACTTGTCAAGAGAATTCGACCTAAAAAAATCGCATAA
AGAAAGTCAAATACTGGAGAAAGAAAGACTTTTAGAAACACAATCactaa
atgaaaaagaaaagattgatcTAGATTTAGGGAATTCAGGATTCGATTCC
AAGGAGGAACTAACCCTTATTGAGGATACTTCTGATGGTCAGCCCTGTCA
ACCGACACTAGATCTGGATAATGAGAATCATGATGACGGATCTGCACCAA
TGTTACCAAGCGAACCAGACAAGAGTATCCGAAATTCACTATGGACATTA
TTTACAAGCATAGATGTTGTgctcatttttatattttcattttttgtttt
ctttgaattGATAACTTATGATTCTTGGACTCCAATGTTATGTACAGAAA
TTTTACATTGGGGAATTGTAGAGATTAACTTAATCTTTCTTGGTAATAGT
ATCGCTGTTGGTATCATTTATCTTGCGTGTTATTTCAGACCACCAGCAAA
AGAACAGTTCTATACTCTGGCTGTATATTCGTTTGTAGCTGG Run BLAST on NCBI transcript from alignment at sc0002565:15845..17463- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040799 ID=TCONS_00040799|Name=TCONS_00040799|organism=Clytia hemisphaerica|type=transcript|length=1619bp|location=Sequence derived from alignment at sc0002565:15845..17463- (Clytia hemisphaerica)
AATTGGTCAATTTATGAAAGTAATTGAGTTTTTGAGAAAACAAGTTTGGT
TAAGTTGGTGGAATGCTTGTGATGTGTTCAAGAAATTAATTTTTCTACAG
TATATGTTTTCAAATTCACCATAGAGTACCTTGAAGGTACTATTTGGAGA
ACTTTTTGGATAGGAAATGAGAAACCACTTTGCATGACTTGCGTCGGTTT
GGAATGGGAAGTAAAATCTATCGTCAAAATTTGAAAATGTACAATTCGAA
AACAAAGCAGTGCAAATAGCAGTGCAAATCTTAATGCTATACTTTTTCCC
GGAAAAAGATTCTCCTTCTCTAGCCCTTTGTGTTTGAAATTTCAATTTCT
TCAGGCAAAATATCTCAAACCATCTGATTATCCCTTAAAATGAATTCAAT
TTCTTCATTTTAGTGTTGAATGGATGTTAGGGTAATTACCAATATATCCA
TTCACTCAAAATCGTCAAATTGTGTAAGAAAAAACCATGGACAAAAAATG
GCTTCAAAATCGCCGTCAAACGACCTCAACATTCATTCTCATGAACATTT
CTCTTGGAATTGAACAGTCAATCACATTCGCTTCATTATTCATCTACCTC
AAAGATGTCTTACACGTCTCTGGTAATCGTTTGACCACATTCTACAGCGC
TATATCGGGAATTTATTTCCTATCTCAAATCATATCGTCATTGGCGTTAA
CCAGAATCTTTGATAAATATCGTCGACTTAAGTTAACTTTCTTCATTGTT
AACAACTTCACCATTGCTGGTAATGCACTGTACACACTTCCATATTCACC
CTGGTGTTTACTGGCTGGTCGTCTCATCTCTGGTGTTGCAGGATGCATCA
AACCAATCATGGTATCCGAATTGACCAGATCATTTCCTAAAGATGAGCTT
TTACCACAAATATCTAGATTCGCATTTGCTTTTTCAGTTGGTTTCACTTT
AGGACCTTTTGTTAATTTTGTATTCCTCAAAGCTGATTTCCGATTCTTAG
GTATACCAATCACTTATGCTAATGGTGCTGGTTTATTGATAACTTTCTTA
TTCATCTTGATGCAGATTCTAACTGTGTTTTTCGTTACCGACTTGTCAAG
AGAATTCGACCTAAAAAAATCGCATAAAGAAAGTCAAATACTGGAGAAAG
AAAGACTTTTAGAAACACAATCACTAAATGAAAAAGAAAAGATTGATCTA
GATTTAGGGAATTCAGGATTCGATTCCAAGGAGGAACTAACCCTTATTGA
GGATACTTCTGATGGTCAGCCCTGTCAACCGACACTAGATCTGGATAATG
AGAATCATGATGACGGATCTGCACCAATGTTACCAAGCGAACCAGACAAG
AGTATCCGAAATTCACTATGGACATTATTTACAAGCATAGATGTTGTGCT
CATTTTTATATTTTCATTTTTTGTTTTCTTTGAATTGATAACTTATGATT
CTTGGACTCCAATGTTATGTACAGAAATTTTACATTGGGGAATTGTAGAG
ATTAACTTAATCTTTCTTGGTAATAGTATCGCTGTTGGTATCATTTATCT
TGCGTGTTATTTCAGACCACCAGCAAAAGAACAGTTCTATACTCTGGCTG
TATATTCGTTTGTAGCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040799-exon-sc0002565-1575043694:17328..17463 | TCONS_00040799-exon-sc0002565-1575043694:17328..17463 | Clytia hemisphaerica | exon |
| TCONS_00040799-exon-sc0002565-1575043694:15845..17050 | TCONS_00040799-exon-sc0002565-1575043694:15845..17050 | Clytia hemisphaerica | exon |
| TCONS_00040799-exon-sc0002565-1510915933:17328..17463 | TCONS_00040799-exon-sc0002565-1510915933:17328..17463 | Clytia hemisphaerica | exon |
| TCONS_00040799-exon-sc0002565-1510915933:15845..17050 | TCONS_00040799-exon-sc0002565-1510915933:15845..17050 | Clytia hemisphaerica | exon |
| TCONS_00040799-exon-sc0002565-1491911889:17328..17463 | TCONS_00040799-exon-sc0002565-1491911889:17328..17463 | Clytia hemisphaerica | exon |
| TCONS_00040799-exon-sc0002565-1491911889:15845..17050 | TCONS_00040799-exon-sc0002565-1491911889:15845..17050 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002565 | supercontig | sc0002565:15845..17463 - |
Blast
The following BLAST results are available for this feature:
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