TCONS_00040792 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040792
Unique NameTCONS_00040792
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length279

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040792 ID=TCONS_00040792|Name=TCONS_00040792|organism=Clytia hemisphaerica|type=transcript|length=279bp
AAGGTCTTAATTTTTCACTATAAAGCATTGAATCTCGAATACTAAACTTC
CAATGGGGCAACCAAGATGACTTAAATGTAAATCAATAAATATTCAAACT
CAATAAATATATATATTACTAACCAATCAGAGACAAAGATTGTGTTCGTC
TTTGACCAATTATGTACAAGGATGACTTGGCGTTAGCCAATCATGTGCAA
GGATAACTTGGCTTTGACCAATCATGTGCACGGATGACTTGACTTTAACC
AATTATGTACAAGGATAACTTGGCTTTGA
Run BLAST on NCBI

transcript from alignment at sc0002563:5..283

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040792 ID=TCONS_00040792|Name=TCONS_00040792|organism=Clytia hemisphaerica|type=transcript|length=279bp|location=Sequence derived from alignment at sc0002563:5..283 (Clytia hemisphaerica)
TCAAAGCCAAGTTATCCTTGTACATAATTGGTTAAAGTCAAGTCATCCGT
GCACATGATTGGTCAAAGCCAAGTTATCCTTGCACATGATTGGCTAACGC
CAAGTCATCCTTGTACATAATTGGTCAAAGACGAACACAATCTTTGTCTC
TGATTGGTTAGTAATATATATATTTATTGAGTTTGAATATTTATTGATTT
ACATTTAAGTCATCTTGGTTGCCCCATTGGAAGTTTAGTATTCGAGATTC
AATGCTTTATAGTGAAAAATTAAGACCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024866XLOC_024866Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040792-exon-sc0002563-1491911889:5..283TCONS_00040792-exon-sc0002563-1491911889:5..283Clytia hemisphaericaexon
TCONS_00040792-exon-sc0002563-1510915933:5..283TCONS_00040792-exon-sc0002563-1510915933:5..283Clytia hemisphaericaexon
TCONS_00040792-exon-sc0002563-1575043694:5..283TCONS_00040792-exon-sc0002563-1575043694:5..283Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002563supercontigsc0002563:5..283 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.14827	4.16018	1.42401	0	0	0.591224	0	0.602908	0.42211	0.522852	0	0	0.666284	0	0.284435	1.22097	0.376034	0.508252	0	1.11441	0.484312	0	0.815068	0	0	0	0.686852	0.733027	1.11195	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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