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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040779 ID=TCONS_00040779|Name=TCONS_00040779|organism=Clytia hemisphaerica|type=transcript|length=1333bp
aaattttttgccttttaaaagttttttttttcaaattagctATTAGTTAA
TAAAATGCTGATAACTTTAATCTTAACATAGATAGTTTGAATTGCCTTAg
atggattaattttggcgggaatttaagtTTTCGAATGAtgaattttgtta
aatttggcggggactCAACCTGATACATtggaaattacaaaaaatgcata
aaaactgaaaaatactttttgtgttgattttCATAGGATTATCCAAGAGA
CCAATCCCTTCCAAAAATTAATCCATTTATTCTAGGCCGCAATTTCTTGC
TCGTTGAAAAGGTAATCttaagtggaatattatcaaactggcagattttg
aaagaatttggaAAATGCAGACAAAAGATGAAGAAGTAAAGAAATCAACT
CATGGTAGCATACACTTTCAATTACCATTATCACATTCAGGCTTTTGAAA
ACTTTGGAACATTATCAATGTGCAAAATATACACCTTAAGTCTATCCAGT
CAGATATCTAAAGCGTTATACATGTTTGGATCAAGTTTCGTTAAAATTGT
CTTGGTTCAATGCTTTCACATAAAGTTCATCCCCAAATAGACTTTGATCG
TTCTTTTAAAGAAAGATAAATTTTAGTTAATTAACTTTAGATCATCATTG
AGCCAGGACCATTCTAAGGATAGTTTCGACACCGTGGTAATgttcaaagt
ttgaaaatgtACTGGTATGAAAATGGTATTTTGATATTAATTCTATCAGG
AGTTGattttgtctgcttcattttttatcttcattttcgaaatgttttca
aatatttctcatatGATAATATCCCAGTTAGGActagttttttcaaaaag
taataaatCGTAACTTGAGTAATTCAAATTAATCTATTTAGATTTGGTTA
TACATAGCTATTTACAATTGACTGACAGTTAATTTGAAAAGGACTTTAAT
TTTGTTTAATGTTTTAAGAGTAATTACAGTATGGAATTAATAAGAGTTTG
GTTGGTTGttgctttaatttttttgttttcacaagTCTCTTACAATTTAT
TGGTGAAGCTGCTTTTAATATTCGCACTAATTGTGGTTTTTATTtccaat
gggcttttccagaataaaattgaatatagggggggtggaagatataacat
tttttagatATTTACATCAAGCATCAGTttacaagcatcagttgaccacc
tggacattcaaaattacacccaaacagagcaaattacccccaaacagagc
ataTTTATtgcccggacaaggcaaattttgttagatttttcactaacccc
cggacactatatcctccacccccccccccccNN Run BLAST on NCBI transcript from alignment at sc0002557:2681..4013 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040779 ID=TCONS_00040779|Name=TCONS_00040779|organism=Clytia hemisphaerica|type=transcript|length=1333bp|location=Sequence derived from alignment at sc0002557:2681..4013 (Clytia hemisphaerica)
NNgggggggggggggtggaggatatagtgtccgggggttagtgaaaaatc
taacaaaatttgccttgtccgggcaATAAAtatgctctgtttgggggtaa
tttgctctgtttgggtgtaattttgaatgtccaggtggtcaactgatgct
tgtaaACTGATGCTTGATGTAAATatctaaaaaatgttatatcttccacc
ccccctatattcaattttattctggaaaagcccattggaAATAAAAACCA
CAATTAGTGCGAATATTAAAAGCAGCTTCACCAATAAATTGTAAGAGAct
tgtgaaaacaaaaaaattaaagcaaCAACCAACCAAACTCTTATTAATTC
CATACTGTAATTACTCTTAAAACATTAAACAAAATTAAAGTCCTTTTCAA
ATTAACTGTCAGTCAATTGTAAATAGCTATGTATAACCAAATCTAAATAG
ATTAATTTGAATTACTCAAGTTACGatttattactttttgaaaaaactag
TCCTAACTGGGATATTATCatatgagaaatatttgaaaacatttcgaaaa
tgaagataaaaaatgaagcagacaaaatCAACTCCTGATAGAATTAATAT
CAAAATACCATTTTCATACCAGTacattttcaaactttgaacATTACCAC
GGTGTCGAAACTATCCTTAGAATGGTCCTGGCTCAATGATGATCTAAAGT
TAATTAACTAAAATTTATCTTTCTTTAAAAGAACGATCAAAGTCTATTTG
GGGATGAACTTTATGTGAAAGCATTGAACCAAGACAATTTTAACGAAACT
TGATCCAAACATGTATAACGCTTTAGATATCTGACTGGATAGACTTAAGG
TGTATATTTTGCACATTGATAATGTTCCAAAGTTTTCAAAAGCCTGAATG
TGATAATGGTAATTGAAAGTGTATGCTACCATGAGTTGATTTCTTTACTT
CTTCATCTTTTGTCTGCATTTtccaaattctttcaaaatctgccagtttg
ataatattccacttaaGATTACCTTTTCAACGAGCAAGAAATTGCGGCCT
AGAATAAATGGATTAATTTTTGGAAGGGATTGGTCTCTTGGATAATCCTA
TGaaaatcaacacaaaaagtatttttcagtttttatgcattttttgtaat
ttccaATGTATCAGGTTGagtccccgccaaatttaacaaaattcaTCATT
CGAAAacttaaattcccgccaaaattaatccatcTAAGGCAATTCAAACT
ATCTATGTTAAGATTAAAGTTATCAGCATTTTATTAACTAATagctaatt
tgaaaaaaaaaacttttaaaaggcaaaaaattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040779-exon-sc0002557-1491911889:2681..4013 | TCONS_00040779-exon-sc0002557-1491911889:2681..4013 | Clytia hemisphaerica | exon |
| TCONS_00040779-exon-sc0002557-1510915933:2681..4013 | TCONS_00040779-exon-sc0002557-1510915933:2681..4013 | Clytia hemisphaerica | exon |
| TCONS_00040779-exon-sc0002557-1575043694:2681..4013 | TCONS_00040779-exon-sc0002557-1575043694:2681..4013 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002557 | supercontig | sc0002557:2681..4013 . |
Blast
The following BLAST results are available for this feature:
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