TCONS_00040776 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040776
Unique NameTCONS_00040776
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length735

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040776 ID=TCONS_00040776|Name=TCONS_00040776|organism=Clytia hemisphaerica|type=transcript|length=735bp
GATGACTCAGATATTGTGAAAGCAATATTACAAGACTTTCCTAATAGTGG
GATCAGACGTATGAAACGCTACTTGTATTGGAGATGATATCATATCCAAT
GGGAAAGAAATCGCAGCATAATGTGGAATGTAGACCCAGAGGGGTTTTGA
GGCGATCAATAACTTCAAATATGATTCATCGAAGAAAATATAGTGTTGCT
GGACCGCTTGCGCTGTGGCATATCGACGGCCACTATAAATTGATACGCTA
GGGTTTTGTAACAAATGGGGGTATTGATGGGTTTTCCAGAAAGATAATGT
ATTTAAGATGCTCAACAAATAACAGAGCGGATACAGTTGGTGGGCTGTTT
ATGGAAGCTGTGTTGTCCCATGGATTACCTTCCAGAGTTACAGCTGACCA
AGGCGGAGAAAATGTTGAAGTTGCACGCTATATGCTGAGTCATCCTCTTC
AGGGAGAAGGTCGTGGAAGTTTTATTCCTGGAAAGAGCTGCCACAAACAA
CGAATATAACGTCTCTGGCGTGACTTATTTGTTGGTTGTATCAGTATTTA
TCATTGTGCCTTTACATATCTTGAAGATAACTATTATTTAGACATATCAA
ACCATGTTCACATGATAGTTTTACACTATATTTCTTCAAAGAATTAATGA
TCATTTGGGAAGATTTATTTCTGGGTGGGATAACCATCCTCTGTCCACTG
AGAAAAACGAAACACCCAACCAACTTTGGTTTGAG
Run BLAST on NCBI

transcript from alignment at sc0002556:2764..3498

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040776 ID=TCONS_00040776|Name=TCONS_00040776|organism=Clytia hemisphaerica|type=transcript|length=735bp|location=Sequence derived from alignment at sc0002556:2764..3498 (Clytia hemisphaerica)
CTCAAACCAAAGTTGGTTGGGTGTTTCGTTTTTCTCAGTGGACAGAGGAT
GGTTATCCCACCCAGAAATAAATCTTCCCAAATGATCATTAATTCTTTGA
AGAAATATAGTGTAAAACTATCATGTGAACATGGTTTGATATGTCTAAAT
AATAGTTATCTTCAAGATATGTAAAGGCACAATGATAAATACTGATACAA
CCAACAAATAAGTCACGCCAGAGACGTTATATTCGTTGTTTGTGGCAGCT
CTTTCCAGGAATAAAACTTCCACGACCTTCTCCCTGAAGAGGATGACTCA
GCATATAGCGTGCAACTTCAACATTTTCTCCGCCTTGGTCAGCTGTAACT
CTGGAAGGTAATCCATGGGACAACACAGCTTCCATAAACAGCCCACCAAC
TGTATCCGCTCTGTTATTTGTTGAGCATCTTAAATACATTATCTTTCTGG
AAAACCCATCAATACCCCCATTTGTTACAAAACCCTAGCGTATCAATTTA
TAGTGGCCGTCGATATGCCACAGCGCAAGCGGTCCAGCAACACTATATTT
TCTTCGATGAATCATATTTGAAGTTATTGATCGCCTCAAAACCCCTCTGG
GTCTACATTCCACATTATGCTGCGATTTCTTTCCCATTGGATATGATATC
ATCTCCAATACAAGTAGCGTTTCATACGTCTGATCCCACTATTAGGAAAG
TCTTGTAATATTGCTTTCACAATATCTGAGTCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024850XLOC_024850Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040776-exon-sc0002556-1491911889:2764..3498TCONS_00040776-exon-sc0002556-1491911889:2764..3498Clytia hemisphaericaexon
TCONS_00040776-exon-sc0002556-1510915933:2764..3498TCONS_00040776-exon-sc0002556-1510915933:2764..3498Clytia hemisphaericaexon
TCONS_00040776-exon-sc0002556-1575043694:2764..3498TCONS_00040776-exon-sc0002556-1575043694:2764..3498Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002556supercontigsc0002556:2764..3498 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.607034	0.197318	0.381841	0.523001	0.818619	1.07814	0.607007	0.893	0.511536	0.915228	0.273336	0.359361	0.493434	0.326096	0.268095	0.534313	0.253165	0.0518973	0.143398	0.300111	0.326064	0.381702	0.15467	0.421851	0.289664	0.258519	0	0.0987023	0	0.0762728
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040776 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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