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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040775 ID=TCONS_00040775|Name=TCONS_00040775|organism=Clytia hemisphaerica|type=transcript|length=1450bp
GCCATTCAAAGATGGAAGTTTGGAAACAACAACAGAAATCCAACAATGAC
AGAATACAACAAAATCATCAACCAATAGAAATCAAAGGATATGGTTGCTA
AATTTCTGGGTATATACTCATCACAAAGACTTGTCAGTGATTGGACAATG
GCATCACCCACTGACAAAGCcagaaaaaaagtcatttggcAACAATTCAA
AGAGGCAATGCAATTGTACTACAAACCAACTGAAAATCTGACTTTGAAGT
ACGTTCAATTCTGGTCTCTATGCCAGGAAAAGAAGGAAACGTTCATAGCC
TTCTGCAACCGAGTCAAGAAAGAAGCAAAACACTGCTAATTCACATGTGA
TAGTCAAAATTGTACAGCTCTGACAATCGCAGTCCGAGACCAAACAATTA
TTGGAACATCAAGCAAAGAGATCAAGGAAGAAGCATTGAAAAACTCGTGG
GACCTTGCCTCACTGAGAACAGAGGGCATGTGACTAGAAAACGCTGCCAA
AAGCGCCTTAGAGATCAGTGGTGAAGGCAAGGTCAACAAAGTATATGGGA
AATATTCCAGAAAGAATCCTAACACTAATAGACGGCCTCCAGCTCCACCa
tcaaataaaaacaagaaaacaacatGTTTCTTTTGTGGGATAGTTGGAAA
AAAACAAGATACACGCCAAGGAATGTCCATCTAAAAATCTGTTTGCAGCA
AATGTGACAGAACCGGCCATTACGCTAAAGTATGCAGGAGTTCAACCAAA
TACAAACCAGTGAACAAACTAACTGAAGAATCAACACTAGAAGAAGAGGA
AAACACAGTCTACAATGTTAATCTCTTCAGGATAAGCAATAACATTAACA
ATGACTCCACTGAGGACTTTACAACAGAATTACTGATTAACAATCACTTG
GATACAGTCCTGGCTGACACTGGGGCAGGAATATCAGTATGTAGTCTGGG
AACCGCCAAAAAATGGAATATTGCTAATAGAATGACGAAAATGAACCTCA
AGATTATACTCTACAAGAGCAAATCGATCCCTGTAATTGGTGTCAGTACT
TGCAGTGTATCTTTTAGAGATAGAACAATCCTTGTACAATGGTACATTAT
AGAGGAAGCCTGTGAATCGGGTATAAAATCTTCTCAATTGGGCATTGTCA
AATTTAATGCAACACCAAAAGTTCTAATGCCGATAAGAATGATTGAGCTG
TCAGATGAAAGACTGAAAGAGAACCTACAAGACATAATCAGATCAAAAGC
ACCACCATTCAAAGGAATCGGTAAGTTGAAAAACCATACTATCAAACTCC
CCAATGACACATTCATTAAGCCATTAGCAGAAACTCCAAGACGTATCCCA
TATCATCTGAAAAGCCGGATAGAGGAAACAATTACTGATATGGTATGCCA
GAATGTAATTGAAGAACTCCCTGCTGGCCAGCAAACCCCTTGGATCTCCA Run BLAST on NCBI protein sequence of TCONS_00040775-protein >TCONS_00040775-protein ID=TCONS_00040775-protein|Name=TCONS_00040775-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MTKMNLKIILYKSKSIPVIGVSTCSVSFRDRTILVQWYIIEEACESGIKS
SQLGIVKFNATPKVLMPIRMIELSDERLKENLQDIIRSKAPPFKGIGKLK
NHTIKLPNDTFIKPLAETPRRIPYHLKSRIEETITDMVCQNVIEELPAGQ
QTPWIS Run BLAST on NCBI transcript from alignment at sc0002555:12797..14246 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040775 ID=TCONS_00040775|Name=TCONS_00040775|organism=Clytia hemisphaerica|type=transcript|length=1450bp|location=Sequence derived from alignment at sc0002555:12797..14246 (Clytia hemisphaerica)
TGGAGATCCAAGGGGTTTGCTGGCCAGCAGGGAGTTCTTCAATTACATTC
TGGCATACCATATCAGTAATTGTTTCCTCTATCCGGCTTTTCAGATGATA
TGGGATACGTCTTGGAGTTTCTGCTAATGGCTTAATGAATGTGTCATTGG
GGAGTTTGATAGTATGGTTTTTCAACTTACCGATTCCTTTGAATGGTGGT
GCTTTTGATCTGATTATGTCTTGTAGGTTCTCTTTCAGTCTTTCATCTGA
CAGCTCAATCATTCTTATCGGCATTAGAACTTTTGGTGTTGCATTAAATT
TGACAATGCCCAATTGAGAAGATTTTATACCCGATTCACAGGCTTCCTCT
ATAATGTACCATTGTACAAGGATTGTTCTATCTCTAAAAGATACACTGCA
AGTACTGACACCAATTACAGGGATCGATTTGCTCTTGTAGAGTATAATCT
TGAGGTTCATTTTCGTCATTCTATTAGCAATATTCCATTTTTTGGCGGTT
CCCAGACTACATACTGATATTCCTGCCCCAGTGTCAGCCAGGACTGTATC
CAAGTGATTGTTAATCAGTAATTCTGTTGTAAAGTCCTCAGTGGAGTCAT
TGTTAATGTTATTGCTTATCCTGAAGAGATTAACATTGTAGACTGTGTTT
TCCTCTTCTTCTAGTGTTGATTCTTCAGTTAGTTTGTTCACTGGTTTGTA
TTTGGTTGAACTCCTGCATACTTTAGCGTAATGGCCGGTTCTGTCACATT
TGCTGCAAACAGATTTTTAGATGGACATTCCTTGGCGTGTATCTTGTTTT
TTTCCAACTATCCCACAAAAGAAACatgttgttttcttgtttttatttga
tGGTGGAGCTGGAGGCCGTCTATTAGTGTTAGGATTCTTTCTGGAATATT
TCCCATATACTTTGTTGACCTTGCCTTCACCACTGATCTCTAAGGCGCTT
TTGGCAGCGTTTTCTAGTCACATGCCCTCTGTTCTCAGTGAGGCAAGGTC
CCACGAGTTTTTCAATGCTTCTTCCTTGATCTCTTTGCTTGATGTTCCAA
TAATTGTTTGGTCTCGGACTGCGATTGTCAGAGCTGTACAATTTTGACTA
TCACATGTGAATTAGCAGTGTTTTGCTTCTTTCTTGACTCGGTTGCAGAA
GGCTATGAACGTTTCCTTCTTTTCCTGGCATAGAGACCAGAATTGAACGT
ACTTCAAAGTCAGATTTTCAGTTGGTTTGTAGTACAATTGCATTGCCTCT
TTGAATTGTTgccaaatgactttttttctgGCTTTGTCAGTGGGTGATGC
CATTGTCCAATCACTGACAAGTCTTTGTGATGAGTATATACCCAGAAATT
TAGCAACCATATCCTTTGATTTCTATTGGTTGATGATTTTGTTGTATTCT
GTCATTGTTGGATTTCTGTTGTTGTTTCCAAACTTCCATCTTTGAATGGC
Coding sequence (CDS) from alignment at sc0002555:12797..14246 >TCONS_00040775 ID=TCONS_00040775|Name=TCONS_00040775|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at sc0002555:12797..14246 (Clytia hemisphaerica)
GGAGATCCAAGGGGTTTGCTGGCCAGCAGGGAGTTCTTCAATTACATTCT
GGCATACCATATCAGTAATTGTTTCCTCTATCCGGCTTTTCAGATGATAT
GGGATACGTCTTGGAGTTTCTGCTAATGGCTTAATGAATGTGTCATTGGG
GAGTTTGATAGTATGGTTTTTCAACTTACCGATTCCTTTGAATGGTGGTG
CTTTTGATCTGATTATGTCTTGTAGGTTCTCTTTCAGTCTTTCATCTGAC
AGCTCAATCATTCTTATCGGCATTAGAACTTTTGGTGTTGCATTAAATTT
GACAATGCCCAATTGAGAAGATTTTATACCCGATTCACAGGCTTCCTCTA
TAATGTACCATTGTACAAGGATTGTTCTATCTCTAAAAGATACACTGCAA
GTACTGACACCAATTACAGGGATCGATTTGCTCTTGTAGAGTATAATCTT
GAGGTTCATTTTCGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040775-exon-sc0002555-1491911889:12797..14246 | TCONS_00040775-exon-sc0002555-1491911889:12797..14246 | Clytia hemisphaerica | exon |
| TCONS_00040775-exon-sc0002555-1510915933:12797..14246 | TCONS_00040775-exon-sc0002555-1510915933:12797..14246 | Clytia hemisphaerica | exon |
| TCONS_00040775-exon-sc0002555-1575043694:12797..14246 | TCONS_00040775-exon-sc0002555-1575043694:12797..14246 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002555 | supercontig | sc0002555:12797..14246 . |
Blast
The following BLAST results are available for this feature:
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