TCONS_00040772 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040772
Unique NameTCONS_00040772
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040772 ID=TCONS_00040772|Name=TCONS_00040772|organism=Clytia hemisphaerica|type=transcript|length=472bp
TAGGATGGAGAAATGATGGACGCCCAGTTGGCAATCTATTGTGGTATCGG
TGACAAAGCTAATCCACACTCGTATTCAAAAGTGAAAAGTAGAATTCATT
ACAAAAAAGATGTGTCTTCTCGTGACGTCATCTCTACGCAACTAATGTGG
ACCGATCCTTATGAAGAGAAAAGAGTGTACGTGAAGGAGTCGCTGATTCT
TGACGCCAATGAAGGTCTCTTTGCATCCATTGACGCTGGTAAAAATGAAG
TGATGTCATTTTACAACGGTGTTCGCGTCCCACATTCTGTTgtAGACTCA
CGCGATTGGAAATACAATGATAACACCATATCATTAGATCAAGAAATTGT
TATTGACGTTCCAGCGGAATTCTCTTCGACAACTTCATACAAAGCTTCAC
TTGGTCACAAAGCTAATCATTCGTTCACACCTAATTGTAAATATGATCGG
TAAGTTAGTCTTTTCCTCTTCC
Run BLAST on NCBI

protein sequence of TCONS_00040772-protein

>TCONS_00040772-protein ID=TCONS_00040772-protein|Name=TCONS_00040772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MMDAQLAIYCGIGDKANPHSYSKVKSRIHYKKDVSSRDVISTQLMWTDPY
EEKRVYVKESLILDANEGLFASIDAGKNEVMSFYNGVRVPHSVVDSRDWK
YNDNTISLDQEIVIDVPAEFSSTTSYKASLGHKANHSFTPNCKYDR
Run BLAST on NCBI

transcript from alignment at sc0002555:26107..27954-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040772 ID=TCONS_00040772|Name=TCONS_00040772|organism=Clytia hemisphaerica|type=transcript|length=1848bp|location=Sequence derived from alignment at sc0002555:26107..27954- (Clytia hemisphaerica)
TAGGATGGAGAAATGATGGACGCCCAGTTGGCAATCTATTGTGGTATCGG
TGACAAAGCTAATCCACACTCGTATTCAAAAGTGAAAAGTAGTGAGTTTT
GTTAACGTTGTTTTTAATATCTCACACCACACTATGGTTACTAGGCCCTT
TCAGCTATCGAGCATCTAGGTATAAATTGATATAATGTTCTTTGAAATGT
TTTAGGAATTCATTACAAAAAAGATGTGTCTTCTCGTGACGTCATCTCTA
CGCAACTAATGTGGACCGATCCTTATGAAGAGAAAAGGTACCATTCTTTT
ACAAGAGTTTTTTGGGAAATGTTTGGAGTAGAGATGTTTGAAATTAGGCA
AACCAAATCCATGAGGAGATAAAGATATCGTAAATGAATCATAAAAAATC
CCTACTCTCGCTCATTTTTGAAACAAAAAAAATCTTCACTTCATAAGGGT
TTTAAAAGATTATTGCAAAAATGAAAGTGATACAGGTTGATCGATTATTT
GCAGAGTGTACGTGAAGGAGTCGCTGATTCTTGACGCCAATGAAGGTCTC
TTTGCATCCATTGACGCTGGTAAAAATGTAAGTGATGGTTGTGATGACAT
TTGTCTTACGTGTGCTCAGCTTAGATGAAAGTTACTATCGATCTACAATC
GTGGTCAAAACTGGTGTCCAATAACCCTTTTCCACCGGCAAGTCCCCCCN
CGTGTGCTCAGCTTAGATGAAAGTTACTATCGATCTACAATCGTGGTCAA
AACTGGTGTCCAATAACCCTTTTCCACCGGCAAGTCCCCCCTCTCCCCTA
AAATCAATATTGGAGTTGAATTTTTGCACGTTCACAAGACTCACCATCAA
CATATTGATATTGGTGGAGGGGGTGGACAAACAGTTCTGTCCTTGATTGT
ATCAATGCTCATGCTTTTCTGAAGTATATTCATTAAATTAATTGAAATGA
CCAAACTATCAACACTACTACCGCTTGTTGATAGTTCTCAACATCCAAAA
CAAAGCACTGCTAATTTGAATTTTCATGATACCATCAGTAGGTGTGATAC
TAAAAGATTGAATTTTTCATTTTGTTCATTTTGCAGGAAGTGATGTCATT
TTACAACGGTGTTCGCGTCCCACATTCTGTTGTAAGTCATCTTACCTAAA
CTGCACTGTTTATTTTTACAGAAATTTTGTTTTGCCTAGAGAAAGTATAT
TTTAAAATGCATTAATTTTGGTAATCGCTGCAGACTAAAAAGTTTTTTTA
TTTCTAGGTAGACTCACGCGATTGGAAATACAATGATAACACCATATCAT
TAGATCAAGAAGTGAGTGGTTTTCAGTCTACTTGCTATATTGTGTGTTAT
TCAAATCCTTGGATGCAGTTTTCATGGCGATCAATTCTCTTTTCCTAAAT
AAAAGTTTTTTTTTCTCAATTTCAAGTTAAGCAAGAATATCCATTTTTTT
GTCTTTGTGACATGTCCTGAAATACTTTGGCGCCAGGCTGGATACTTCAA
AATTGGTCTGATTTGACTGAAACTTTGCACACTTCTTGAGATTTCTGGGG
ATAAAAACTTGCTTTACCAGCAAGAGCATGCTGCAATCTAAGCTCGATTA
TTGAGTATACAGTTAGGTCAAGGGAGAGACTCAGAGTATACATAGTTTGA
ACCAGAGCGGTTAGCACTTTAGGTGTTGAAGAATTATTAGGAAAACTTAC
GTCTTTAATCCTCTCTGGTAGATTGTTATTGACGTTCCAGCGGAATTCTC
TTCGACAACTTCATACAAAGCTTCACTTGGTCACAAAGCTAATCATTCGT
TCACACCTAATTGTAAATATGATCGGTAAGTTAGTCTTTTCCTCTTCC

Coding sequence (CDS) from alignment at sc0002555:26107..27954-

>TCONS_00040772 ID=TCONS_00040772|Name=TCONS_00040772|organism=Clytia hemisphaerica|type=CDS|length=2646bp|location=Sequence derived from alignment at sc0002555:26107..27954- (Clytia hemisphaerica)
ATTGTTATTGACGTTCCAGCGGAATTCTCTTCGACAACTTCATACAAAGC
TTCACTTGGTCACAAAGCTAATCATTCGTTCACACCTAATTGTAAATATG
ATCGGTAAGTAGACTCACGCGATTGGAAATACAATGATAACACCATATCA
TTAGATCAAGAAGAAGTGATGTCATTTTACAACGGTGTTCGCGTCCCACA
TTCTGTTAGTGTACGTGAAGGAGTCGCTGATTCTTGACGCCAATGAAGGT
CTCTTTGCATCCATTGACGCTGGTAAAAATGAATTCATTACAAAAAAGAT
GTGTCTTCTCGTGACGTCATCTCTACGCAACTAATGTGGACCGATCCTTA
TGAAGAGAAAAGATGATGGACGCCCAGTTGGCAATCTATTGTGGTATCGG
TGACAAAGCTAATCCACACTCGTATTCAAAAGTGAAAAGTAATTGTTATT
GACGTTCCAGCGGAATTCTCTTCGACAACTTCATACAAAGCTTCACTTGG
TCACAAAGCTAATCATTCGTTCACACCTAATTGTAAATATGATCGGTAAG
TAGACTCACGCGATTGGAAATACAATGATAACACCATATCATTAGATCAA
GAAGAAGTGATGTCATTTTACAACGGTGTTCGCGTCCCACATTCTGTTAG
TGTACGTGAAGGAGTCGCTGATTCTTGACGCCAATGAAGGTCTCTTTGCA
TCCATTGACGCTGGTAAAAATGAATTCATTACAAAAAAGATGTGTCTTCT
CGTGACGTCATCTCTACGCAACTAATGTGGACCGATCCTTATGAAGAGAA
AAGATGATGGACGCCCAGTTGGCAATCTATTGTGGTATCGGTGACAAAGC
TAATCCACACTCGTATTCAAAAGTGAAAAGTAATTGTTATTGACGTTCCA
GCGGAATTCTCTTCGACAACTTCATACAAAGCTTCACTTGGTCACAAAGC
TAATCATTCGTTCACACCTAATTGTAAATATGATCGGTAAGTAGACTCAC
GCGATTGGAAATACAATGATAACACCATATCATTAGATCAAGAAGAAGTG
ATGTCATTTTACAACGGTGTTCGCGTCCCACATTCTGTTAGTGTACGTGA
AGGAGTCGCTGATTCTTGACGCCAATGAAGGTCTCTTTGCATCCATTGAC
GCTGGTAAAAATGAATTCATTACAAAAAAGATGTGTCTTCTCGTGACGTC
ATCTCTACGCAACTAATGTGGACCGATCCTTATGAAGAGAAAAGATGATG
GACGCCCAGTTGGCAATCTATTGTGGTATCGGTGACAAAGCTAATCCACA
CTCGTATTCAAAAGTGAAAAGTAATTGTTATTGACGTTCCAGCGGAATTC
TCTTCGACAACTTCATACAAAGCTTCACTTGGTCACAAAGCTAATCATTC
GTTCACACCTAATTGTAAATATGATCGGTAAGTAGACTCACGCGATTGGA
AATACAATGATAACACCATATCATTAGATCAAGAAGAAGTGATGTCATTT
TACAACGGTGTTCGCGTCCCACATTCTGTTAGTGTACGTGAAGGAGTCGC
TGATTCTTGACGCCAATGAAGGTCTCTTTGCATCCATTGACGCTGGTAAA
AATGAATTCATTACAAAAAAGATGTGTCTTCTCGTGACGTCATCTCTACG
CAACTAATGTGGACCGATCCTTATGAAGAGAAAAGATGATGGACGCCCAG
TTGGCAATCTATTGTGGTATCGGTGACAAAGCTAATCCACACTCGTATTC
AAAAGTGAAAAGTAATTGTTATTGACGTTCCAGCGGAATTCTCTTCGACA
ACTTCATACAAAGCTTCACTTGGTCACAAAGCTAATCATTCGTTCACACC
TAATTGTAAATATGATCGGTAAGTAGACTCACGCGATTGGAAATACAATG
ATAACACCATATCATTAGATCAAGAAGAAGTGATGTCATTTTACAACGGT
GTTCGCGTCCCACATTCTGTTAGTGTACGTGAAGGAGTCGCTGATTCTTG
ACGCCAATGAAGGTCTCTTTGCATCCATTGACGCTGGTAAAAATGAATTC
ATTACAAAAAAGATGTGTCTTCTCGTGACGTCATCTCTACGCAACTAATG
TGGACCGATCCTTATGAAGAGAAAAGATGATGGACGCCCAGTTGGCAATC
TATTGTGGTATCGGTGACAAAGCTAATCCACACTCGTATTCAAAAGTGAA
AAGTAATTGTTATTGACGTTCCAGCGGAATTCTCTTCGACAACTTCATAC
AAAGCTTCACTTGGTCACAAAGCTAATCATTCGTTCACACCTAATTGTAA
ATATGATCGGTAAGTAGACTCACGCGATTGGAAATACAATGATAACACCA
TATCATTAGATCAAGAAGAAGTGATGTCATTTTACAACGGTGTTCGCGTC
CCACATTCTGTTAGTGTACGTGAAGGAGTCGCTGATTCTTGACGCCAATG
AAGGTCTCTTTGCATCCATTGACGCTGGTAAAAATGAATTCATTACAAAA
AAGATGTGTCTTCTCGTGACGTCATCTCTACGCAACTAATGTGGACCGAT
CCTTATGAAGAGAAAAGATGATGGACGCCCAGTTGGCAATCTATTGTGGT
ATCGGTGACAAAGCTAATCCACACTCGTATTCAAAAGTGAAAAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024846XLOC_024846Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040772-proteinTCONS_00040772-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040772-exon-sc0002555-1575043694:27864..27954TCONS_00040772-exon-sc0002555-1575043694:27864..27954Clytia hemisphaericaexon
TCONS_00040772-exon-sc0002555-1575043694:27668..27749TCONS_00040772-exon-sc0002555-1575043694:27668..27749Clytia hemisphaericaexon
TCONS_00040772-exon-sc0002555-1575043694:27378..27450TCONS_00040772-exon-sc0002555-1575043694:27378..27450Clytia hemisphaericaexon
TCONS_00040772-exon-sc0002555-1575043694:26824..26868TCONS_00040772-exon-sc0002555-1575043694:26824..26868Clytia hemisphaericaexon
TCONS_00040772-exon-sc0002555-1575043694:26644..26697TCONS_00040772-exon-sc0002555-1575043694:26644..26697Clytia hemisphaericaexon
TCONS_00040772-exon-sc0002555-1575043694:26107..26233TCONS_00040772-exon-sc0002555-1575043694:26107..26233Clytia hemisphaericaexon
TCONS_00040772-exon-sc0002555-1510915933:27864..27954TCONS_00040772-exon-sc0002555-1510915933:27864..27954Clytia hemisphaericaexon
TCONS_00040772-exon-sc0002555-1510915933:27668..27749TCONS_00040772-exon-sc0002555-1510915933:27668..27749Clytia hemisphaericaexon
TCONS_00040772-exon-sc0002555-1510915933:27378..27450TCONS_00040772-exon-sc0002555-1510915933:27378..27450Clytia hemisphaericaexon
TCONS_00040772-exon-sc0002555-1510915933:26824..26868TCONS_00040772-exon-sc0002555-1510915933:26824..26868Clytia hemisphaericaexon
TCONS_00040772-exon-sc0002555-1510915933:26644..26697TCONS_00040772-exon-sc0002555-1510915933:26644..26697Clytia hemisphaericaexon
TCONS_00040772-exon-sc0002555-1510915933:26107..26233TCONS_00040772-exon-sc0002555-1510915933:26107..26233Clytia hemisphaericaexon
TCONS_00040772-exon-sc0002555-1491911889:27864..27954TCONS_00040772-exon-sc0002555-1491911889:27864..27954Clytia hemisphaericaexon
TCONS_00040772-exon-sc0002555-1491911889:27668..27749TCONS_00040772-exon-sc0002555-1491911889:27668..27749Clytia hemisphaericaexon
TCONS_00040772-exon-sc0002555-1491911889:27378..27450TCONS_00040772-exon-sc0002555-1491911889:27378..27450Clytia hemisphaericaexon
TCONS_00040772-exon-sc0002555-1491911889:26824..26868TCONS_00040772-exon-sc0002555-1491911889:26824..26868Clytia hemisphaericaexon
TCONS_00040772-exon-sc0002555-1491911889:26644..26697TCONS_00040772-exon-sc0002555-1491911889:26644..26697Clytia hemisphaericaexon
TCONS_00040772-exon-sc0002555-1491911889:26107..26233TCONS_00040772-exon-sc0002555-1491911889:26107..26233Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002555supercontigsc0002555:26107..27954 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.3558	33.8071	6.87315	2.56303	6.43539	4.75417	6.79327	3.8379	12.1708	9.45604	6.19059	11.4481	12.7445	11.6409	31.0329	38.3541	24.4052	26.5255	0.819861	4.1659	16.9553	15.8406	28.9232	18.5614	5.80162	5.88859	10.1733	7.50138	17.8172	22.4242
Blast
[Close]
BLAST of TCONS_00040772 vs. Swiss-Prot (Human)
Match: SETD7 (Histone-lysine N-methyltransferase SETD7 OS=Homo sapiens GN=SETD7 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.683e-46
Identity = 79/148 (53.38%), Postives = 97/148 (65.54%), Query Frame = 1 
Query:    4 DGEMMDAQLAIYCGIGDKANPHSYSKVKSRIHYKKDVSSRDVISTQLMWTDPYEEKRVYVKESLILDANEGLFASIDAGKNEVMSFYNGVRVPHSVVDSRDWKYNDNTISLDQEIVIDVPAEFSSTTSYKASLGHKANHSFTPNCKYD 447
            DGEM++ +LA      ++  PH +  +     Y  D S+   IST  +  DPYE +RVYV ESLI  A EGLF+ +  G N VMSFYNGVR+ H  VDSRDW  N NT+SLD+E VIDVP  ++  + Y ASLGHKANHSFTPNC YD
Sbjct:  161 DGEMIEGKLATLMST-EEGRPH-FELMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYD 306
The following BLAST results are available for this feature:
BLAST of TCONS_00040772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SETD73.683e-4653.38Histone-lysine N-methyltransferase SETD7 OS=Homo s... [more]
back to top