TCONS_00040771 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00040771
Unique Name	TCONS_00040771
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	426

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002555:26107..27953-

transcript sequence

>TCONS_00040771 ID=TCONS_00040771|Name=TCONS_00040771|organism=Clytia hemisphaerica|type=transcript|length=426bp
AGGATGGAGAAATGATGGACGCCCAGTTGGCAATCTATTGTGGTATCGGT
GACAAAGCTAATCCACACTCGTATTCAAAAGTGAAAAGTAGAATTCATTA
CAAAAAAGATGTGTCTTCTCGTGACGTCATCTCTACGCAACTAATGTGGA
CCGATCCTTATGAAGAGAAAAGAGTGTACGTGAAGGAGTCGCTGATTCTT
GACGCCAATGAAGGTCTCTTTGCATCCATTGACGCTGGTAAAAATgtAGA
CTCACGCGATTGGAAATACAATGATAACACCATATCATTAGATCAAGAAA
TTGTTATTGACGTTCCAGCGGAATTCTCTTCGACAACTTCATACAAAGCT
TCACTTGGTCACAAAGCTAATCATTCGTTCACACCTAATTGTAAATATGA
TCGGTAAGTTAGTCTTTTCCTCTTCC

Run BLAST on NCBI

transcript from alignment at sc0002555:26107..27953-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00040771 ID=TCONS_00040771|Name=TCONS_00040771|organism=Clytia hemisphaerica|type=transcript|length=1847bp|location=Sequence derived from alignment at sc0002555:26107..27953- (Clytia hemisphaerica)
AGGATGGAGAAATGATGGACGCCCAGTTGGCAATCTATTGTGGTATCGGT
GACAAAGCTAATCCACACTCGTATTCAAAAGTGAAAAGTAGTGAGTTTTG
TTAACGTTGTTTTTAATATCTCACACCACACTATGGTTACTAGGCCCTTT
CAGCTATCGAGCATCTAGGTATAAATTGATATAATGTTCTTTGAAATGTT
TTAGGAATTCATTACAAAAAAGATGTGTCTTCTCGTGACGTCATCTCTAC
GCAACTAATGTGGACCGATCCTTATGAAGAGAAAAGGTACCATTCTTTTA
CAAGAGTTTTTTGGGAAATGTTTGGAGTAGAGATGTTTGAAATTAGGCAA
ACCAAATCCATGAGGAGATAAAGATATCGTAAATGAATCATAAAAAATCC
CTACTCTCGCTCATTTTTGAAACAAAAAAAATCTTCACTTCATAAGGGTT
TTAAAAGATTATTGCAAAAATGAAAGTGATACAGGTTGATCGATTATTTG
CAGAGTGTACGTGAAGGAGTCGCTGATTCTTGACGCCAATGAAGGTCTCT
TTGCATCCATTGACGCTGGTAAAAATGTAAGTGATGGTTGTGATGACATT
TGTCTTACGTGTGCTCAGCTTAGATGAAAGTTACTATCGATCTACAATCG
TGGTCAAAACTGGTGTCCAATAACCCTTTTCCACCGGCAAGTCCCCCCNC
GTGTGCTCAGCTTAGATGAAAGTTACTATCGATCTACAATCGTGGTCAAA
ACTGGTGTCCAATAACCCTTTTCCACCGGCAAGTCCCCCCTCTCCCCTAA
AATCAATATTGGAGTTGAATTTTTGCACGTTCACAAGACTCACCATCAAC
ATATTGATATTGGTGGAGGGGGTGGACAAACAGTTCTGTCCTTGATTGTA
TCAATGCTCATGCTTTTCTGAAGTATATTCATTAAATTAATTGAAATGAC
CAAACTATCAACACTACTACCGCTTGTTGATAGTTCTCAACATCCAAAAC
AAAGCACTGCTAATTTGAATTTTCATGATACCATCAGTAGGTGTGATACT
AAAAGATTGAATTTTTCATTTTGTTCATTTTGCAGGAAGTGATGTCATTT
TACAACGGTGTTCGCGTCCCACATTCTGTTGTAAGTCATCTTACCTAAAC
TGCACTGTTTATTTTTACAGAAATTTTGTTTTGCCTAGAGAAAGTATATT
TTAAAATGCATTAATTTTGGTAATCGCTGCAGACTAAAAAGTTTTTTTAT
TTCTAGGTAGACTCACGCGATTGGAAATACAATGATAACACCATATCATT
AGATCAAGAAGTGAGTGGTTTTCAGTCTACTTGCTATATTGTGTGTTATT
CAAATCCTTGGATGCAGTTTTCATGGCGATCAATTCTCTTTTCCTAAATA
AAAGTTTTTTTTTCTCAATTTCAAGTTAAGCAAGAATATCCATTTTTTTG
TCTTTGTGACATGTCCTGAAATACTTTGGCGCCAGGCTGGATACTTCAAA
ATTGGTCTGATTTGACTGAAACTTTGCACACTTCTTGAGATTTCTGGGGA
TAAAAACTTGCTTTACCAGCAAGAGCATGCTGCAATCTAAGCTCGATTAT
TGAGTATACAGTTAGGTCAAGGGAGAGACTCAGAGTATACATAGTTTGAA
CCAGAGCGGTTAGCACTTTAGGTGTTGAAGAATTATTAGGAAAACTTACG
TCTTTAATCCTCTCTGGTAGATTGTTATTGACGTTCCAGCGGAATTCTCT
TCGACAACTTCATACAAAGCTTCACTTGGTCACAAAGCTAATCATTCGTT
CACACCTAATTGTAAATATGATCGGTAAGTTAGTCTTTTCCTCTTCC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_024846	XLOC_024846	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002555	supercontig	sc0002555:26107..27953 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13944	0	0	0.696861	1.4605	3.64616	4.16817	7.94256	5.5016	3.43696	4.09186	6.72971	7.86857	5.2324	0	0	0	0	1.26568	0	0	0	0	0	5.08039	10.5657	0	0	0	0

Blast

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BLAST of TCONS_00040771 vs. Swiss-Prot (Human)
Match: SETD7 (Histone-lysine N-methyltransferase SETD7 OS=Homo sapiens GN=SETD7 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 5.109e-35
Identity = 69/148 (46.62%), Postives = 86/148 (58.11%), Query Frame = 3

Query:    3 DGEMMDAQLAIYCGIGDKANPHSYSKVKSRIHYKKDVSSRDVISTQLMWTDPYEEKRVYVKESLILDANEGLFASIDAGKN---------------VDSRDWKYNDNTISLDQEIVIDVPAEFSSTTSYKASLGHKANHSFTPNCKYD 401
            DGEM++ +LA      ++  PH +  +     Y  D S+   IST  +  DPYE +RVYV ESLI  A EGLF+ +  G N               VDSRDW  N NT+SLD+E VIDVP  ++  + Y ASLGHKANHSFTPNC YD
Sbjct:  161 DGEMIEGKLATLMST-EEGRPH-FELMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYD 306

The following BLAST results are available for this feature:

BLAST of TCONS_00040771 vs. Swiss-Prot (Human)

BLAST of TCONS_00040771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SETD7	5.109e-35	46.62	Histone-lysine N-methyltransferase SETD7 OS=Homo s...	[more]

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TCONS_00040771 (transcript) - C. hemisphaerica