TCONS_00040770 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040770
Unique NameTCONS_00040770
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040770 ID=TCONS_00040770|Name=TCONS_00040770|organism=Clytia hemisphaerica|type=transcript|length=506bp
TTTTTtccgacaccaactttttttttcgacaccaactttttttccgacac
caactttttttccgaCACTAACTTTTTTTCGAGACCCGACACAAAGTATT
CTTGTCTCGCTCACCCAACGCCCGATTAATATAAAGTGTGTCTGGGGCTT
AAACAATCGCGCGCATGGTATGTGCAtgtgaaactttttttcagatgaga
tggaacgaaaaaaaaaaaatgaaacacaaGCCTGCAGGAAGTCCAAAGTA
TTAAAATAGAACTGGTTTTGACTGAACCTGAAATCATTCCTTATAGTTGA
GTATTTTgggttttatttcaaatttggttTGTGAACCTTagctttctgtt
tttcttttttgtctatCCCCatacgaaagcatccaccgaagagCTTTTCG
ATTGTGAAATGGTCTATGGAAGATCGAATGATGTGCATGCGTTGCCGCTA
TATAAACTTAAAGGCCTTTTTACACTTTGAGCAATTAACGTTAGCAGGTA
ATCGAG
Run BLAST on NCBI

transcript from alignment at sc0002554:11998..12503

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040770 ID=TCONS_00040770|Name=TCONS_00040770|organism=Clytia hemisphaerica|type=transcript|length=506bp|location=Sequence derived from alignment at sc0002554:11998..12503 (Clytia hemisphaerica)
CTCGATTACCTGCTAACGTTAATTGCTCAAAGTGTAAAAAGGCCTTTAAG
TTTATATAGCGGCAACGCATGCACATCATTCGATCTTCCATAGACCATTT
CACAATCGAAAAGctcttcggtggatgctttcgtatGGGGatagacaaaa
aagaaaaacagaaagctAAGGTTCACAaaccaaatttgaaataaaacccA
AAATACTCAACTATAAGGAATGATTTCAGGTTCAGTCAAAACCAGTTCTA
TTTTAATACTTTGGACTTCCTGCAGGCttgtgtttcattttttttttttc
gttccatctcatctgaaaaaaagtttcacaTGCACATACCATGCGCGCGA
TTGTTTAAGCCCCAGACACACTTTATATTAATCGGGCGTTGGGTGAGCGA
GACAAGAATACTTTGTGTCGGGTCTCGAAAAAAAGTTAGTGtcggaaaaa
aagttggtgtcggaaaaaaagttggtgtcgaaaaaaaaagttggtgtcgg
aAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024845XLOC_024845Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040770-exon-sc0002554-1491911889:11998..12503TCONS_00040770-exon-sc0002554-1491911889:11998..12503Clytia hemisphaericaexon
TCONS_00040770-exon-sc0002554-1510915933:11998..12503TCONS_00040770-exon-sc0002554-1510915933:11998..12503Clytia hemisphaericaexon
TCONS_00040770-exon-sc0002554-1575043694:11998..12503TCONS_00040770-exon-sc0002554-1575043694:11998..12503Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002554supercontigsc0002554:11998..12503 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.270503	0.926258	0	0.127295	0.153577	1.00644	0.201323	0.249371	0.48409	0	0.476669	0.0825043	0.271319	0.218375	0.179347	0.0919124	0.888873	0.265755	1.27044	0.507008	0.136963	0.249039	0.384756	0.114462	0.982768	0.174806	0.530337	0.405247
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top