TCONS_00040764 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040764
Unique NameTCONS_00040764
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length799

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040764 ID=TCONS_00040764|Name=TCONS_00040764|organism=Clytia hemisphaerica|type=transcript|length=799bp
GACCGCTTGGGATTGAGGGATGGATGGATGTGGCTGGTAGTGTAACTTGT
TTTGTCTTAATCGGTGTACCTGTAGAGCATATGAATGGACCATGGACCAT
CATAACTCTCTCGAGGCTTTCAGGCCACTATTCAAAATTGGTGTATGTCT
TTTAATATATAAAGCCTCTTTGATGAGTAAAATACTCCAATTGTTTGCGG
AGTCGATAATTTTTGTATTGTCTTTGACCAAATTGATGTAATACAATCTT
TCATCCCCACGAGTAACGttgtcaatatcaaaaagcaacATTGTTCTTAG
ATAATTTAATTGGTTGCATTCCCTTAAGTGATCGAAAATGGCACTATCCT
TTCTTGTTGCATGTTCAACACTGCGTTCATGTAAATTCCTTTCAGTTTTT
CCAATATACGCGGCCCCTGATGATTACAAAGCTAATGTTGTATATCGCTT
TTGTTGTCCTGGTTGTTCCGCCGCGTATATTGGAAAAACTGAAAGGAATT
TACATGAACGCAGTGTTGAACATGCAACAAGAAAGGATAGTGCCATTTTC
GATCACTTAAGGGAATGCAACCAATTAAATTATCTAAGAACAATgttgct
ttttgatattgacaaCGTTACTCGTGGGGATGAAAGATTGTATTACATCA
ATTTGGTCAAAGACAATACAAAAATTATCGACTCCGCAAACAATTGGAGT
ATTTTACTCATCAAAGAGGCTTTATATATTAAAAGACATACACCAATTTT
GAATAGTGGCCTGAAAGCCTCGAGAGAGTTATATTTGTTTTCGTAGCCT
Run BLAST on NCBI

protein sequence of TCONS_00040764-protein

>TCONS_00040764-protein ID=TCONS_00040764-protein|Name=TCONS_00040764-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
MALSFLVACSTLRSCKFLSVFPIYAAPDDYKANVVYRFCCPGCSAAYIGK
TERNLHERSVEHATRKDSAIFDHLRECNQLNYLRTMLLFDIDNVTRGDER
LYYINLVKDNTKIIDSANNWSILLIKEALYIKRHTPILNSGLKASRELYL
FS
Run BLAST on NCBI

transcript from alignment at sc0002553:7493..8291

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040764 ID=TCONS_00040764|Name=TCONS_00040764|organism=Clytia hemisphaerica|type=transcript|length=799bp|location=Sequence derived from alignment at sc0002553:7493..8291 (Clytia hemisphaerica)
AGGCTACGAAAACAAATATAACTCTCTCGAGGCTTTCAGGCCACTATTCA
AAATTGGTGTATGTCTTTTAATATATAAAGCCTCTTTGATGAGTAAAATA
CTCCAATTGTTTGCGGAGTCGATAATTTTTGTATTGTCTTTGACCAAATT
GATGTAATACAATCTTTCATCCCCACGAGTAACGttgtcaatatcaaaaa
gcaacATTGTTCTTAGATAATTTAATTGGTTGCATTCCCTTAAGTGATCG
AAAATGGCACTATCCTTTCTTGTTGCATGTTCAACACTGCGTTCATGTAA
ATTCCTTTCAGTTTTTCCAATATACGCGGCGGAACAACCAGGACAACAAA
AGCGATATACAACATTAGCTTTGTAATCATCAGGGGCCGCGTATATTGGA
AAAACTGAAAGGAATTTACATGAACGCAGTGTTGAACATGCAACAAGAAA
GGATAGTGCCATTTTCGATCACTTAAGGGAATGCAACCAATTAAATTATC
TAAGAACAATgttgctttttgatattgacaaCGTTACTCGTGGGGATGAA
AGATTGTATTACATCAATTTGGTCAAAGACAATACAAAAATTATCGACTC
CGCAAACAATTGGAGTATTTTACTCATCAAAGAGGCTTTATATATTAAAA
GACATACACCAATTTTGAATAGTGGCCTGAAAGCCTCGAGAGAGTTATGA
TGGTCCATGGTCCATTCATATGCTCTACAGGTACACCGATTAAGACAAAA
CAAGTTACACTACCAGCCACATCCATCCATCCCTCAATCCCAAGCGGTC

Coding sequence (CDS) from alignment at sc0002553:7493..8291

>TCONS_00040764 ID=TCONS_00040764|Name=TCONS_00040764|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at sc0002553:7493..8291 (Clytia hemisphaerica)
CTACGAAAACAAATATAACTCTCTCGAGGCTTTCAGGCCACTATTCAAAA
TTGGTGTATGTCTTTTAATATATAAAGCCTCTTTGATGAGTAAAATACTC
CAATTGTTTGCGGAGTCGATAATTTTTGTATTGTCTTTGACCAAATTGAT
GTAATACAATCTTTCATCCCCACGAGTAACGttgtcaatatcaaaaagca
acATTGTTCTTAGATAATTTAATTGGTTGCATTCCCTTAAGTGATCGAAA
ATGGCACTATCCTTTCTTGTTGCATGTTCAACACTGCGTTCATGTAAATT
CCTTTCAGTTTTTCCAATATACGCGGCGGAACAACCAGGACAACAAAAGC
GATATACAACATTAGCTTTGTAATCATCAGGGGCCGCGTATATTGGAAAA
ACTGAAAGGAATTTACATGAACGCAGTGTTGAACATGCAACAAGAAAGGA
TAGTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024839XLOC_024839Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040764-proteinTCONS_00040764-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040764-exon-sc0002553-1491911889:7493..8291TCONS_00040764-exon-sc0002553-1491911889:7493..8291Clytia hemisphaericaexon
TCONS_00040764-exon-sc0002553-1510915933:7493..8291TCONS_00040764-exon-sc0002553-1510915933:7493..8291Clytia hemisphaericaexon
TCONS_00040764-exon-sc0002553-1575043694:7493..8291TCONS_00040764-exon-sc0002553-1575043694:7493..8291Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002553supercontigsc0002553:7493..8291 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.481054	0.586379	0.885095	0.466269	17.9571	10.9196	9.50222	11.0735	2.93897	2.51159	0.974745	0.881043	0.23995	0.395972	0.170724	0.366426	0.687574	0.173496	0.319607	1.204	0.581388	0.340297	0.919126	0.626818	0.451926	0.172857	8.90488	12.2314	0.467191	0.407995
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040764 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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