TCONS_00040756 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040756
Unique NameTCONS_00040756
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040756 ID=TCONS_00040756|Name=TCONS_00040756|organism=Clytia hemisphaerica|type=transcript|length=2422bp
TACAAATTTAAAGGAAGAGTTCGAAAAGGAGGTCGCTATTATTCTCGGAC
CAAAGGACAAATATCGTGGTGCTGACTTCCGTTTCTCTGCTATTGTTGTT
CACCGTCAAATGAAACCTAAATTTCCATCCGAAGTTTCTGATTTAACTTA
TTCGCTGGTTGAGATTTCTAGGCTTGTTTACCAACCTGCACTGAGACGAT
ctccaaaatcaattttgaggCTCTATACAATGTCTTTCTTGCATAGTATG
AGGTGTAAGCAAATCTTTGGTGAATATCCAAAATTATCTAAGTTTTATGG
TGAATACTATCACTCAATCATTGATCATTTTGCCTTTGTTCAAAGAATTG
TCGCCCCTTCATCTCTCCACACGGAAAGTGAAGAGCGACTATTTGGAACG
CTGCGATTGATAGGGCTGGCCACATCAGGAAGATCAGTAGAATCAGTTCG
TGATGTTGGTATAGTAAGGTAGACTTTTACGTTATttcagacaaagataa
attctTCAGTGGAAATTTAGAGCTTATCAATGTTTTACGTTTTTAAGTCT
Tagtgattttttaaaagtttagcctagagaaataaaaaactttcagaaag
tgGTTTTGATGTTAANGAAGAAGAACTTAGCGAACGTGACACTTTGACTT
TATATGGAACACGTCAAGCAGGCAGTCGATACGAAGATCAACGACTTGGT
CTCTACCACGAATCAAAAGAAGAGGCAAAGGAAAGAACAGATACACGACA
ATTGAAGGAAGATGAAGGTCTGGTGAAGCGGAAAAAACATGCTCCAAGTC
CACATAAAGTGAAATTTGATCGAGCTGGATTACTTCGAAGGTCAAGACTG
GCGTGCCTTCCTGCAACAAATCAGTGACTTTTTGAAACACGATGAAGGAG
TTTGGTGGAAAAGAGACGGCAATTATGTCGAATTTTTGGATggtgaagat
gaagatgatttTCGCGAAGAAGGTCCACGGTTGAAGGATTTTACTGATAC
AATGTTTTATGAAcTTTACGAGCCTTTGAAGCAAGACTGGGAAGAGTGTA
AAAGGAACGGCGTTGCTGCGAAACTATTGGATAGCAGCTACATCGACGAA
GACGATGATCCAGAAATTGAGGAGCCAAGAAAAGAAAGTCCTCCACAAGA
ACGAGAGAACGAACAAGAAGAAGAACGCGTGGAAATCATTGAGGTTGCTG
CAAATGTTGAGAGCGAGAGACCAGAATGTCCAGtaaaTACCATCAAACAC
GACCTGTCACACACCCTCAAATCGAGTACTTCAAAAAGTCTTTACATCTT
GTTCGGTATGTGTGACGACATCAAAAACTTTGATCATCACCGAATGAAGC
ACCGTACCGATAGAAATGAAAGATCTATGGAAATATGTCGGACAATCCAA
AACAGGTTAAGGCCTCAAATTGTTACCATCCATGAAGAACagaaaaaatt
ggtgaaaaagtGGGAAGGGAAATTCTTTAAAGATCATGGTTTCGAACCCA
ATAATGACGATGTTAATAAGAACGAAGATATTTCTCTATCTCTAAATAAA
GTTAAACACTGTGTCGCTGTCCTGAAGTCATGGAGCAAGTAGTAAAACAT
TTTGTTTCCTCTTTTTATAACTTCACTATCTTTTAGATCTGTTTAGATCA
AAGATATATTTCCTAGAAAAGTTATataattatttattttctatAGTTAG
TTACGGTTCTACTTCTTTCATTATGGGAAAGTTATTTTTAACCGAGAAAA
GATGGTGGgagataagattttttttgggTACTCGGTGATTTCGCAGTATG
GTCTCCAAAATCATTCATTTTCTCACTAACTTATTTAAAATCCAGAAGAA
ATGCATGCTATTTGTctgctttttcaaatttgaaccTTTTGTTTCATCAT
TATCCGTTTCATTTTACTATATTTTATTAAGTTATTGATTGTTTCATATA
TTTCATTATTGAAACATGGTTCCACtatttcataattttatcaTTCTTAT
AATTAATAGACCACATTTTTTCGCATAGTGTCCTCAGAGACAAAAACTTT
ATTGAAAGGGGGCAAAAATTAGTTGCAACTGAGAAAATCTCTAGGCGGGA
AAAATTTTCAGGTTTCAAGCCAGTAAAATACAGCATTAATTTGGCATTTA
TgctttttttaggaaaaattgtaaaaacgtACCTTTTTCAGAGACATCAA
AAAATGCCAATCTTGGCTCAAGGCGGGATTGAGAAGGggaacattctttt
tcaaaatctcaaGGGGGGGACTAAGGACATTATGTATTTTGTATCGTAGT
TTTTAGCAATTATATTTTAAACTAATTAGACTGtaatatttgaatttcaa
tgtAACATAATATTTAAGTAGCATTCATAAATTATTCATATAAGATattt
atttcataaattttcattttat
Run BLAST on NCBI

protein sequence of TCONS_00040756-protein

>TCONS_00040756-protein ID=TCONS_00040756-protein|Name=TCONS_00040756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MFYELYEPLKQDWEECKRNGVAAKLLDSSYIDEDDDPEIEEPRKESPPQE
RENEQEEERVEIIEVAANVESERPECPVNTIKHDLSHTLKSSTSKSLYIL
FGMCDDIKNFDHHRMKHRTDRNERSMEICRTIQNRLRPQIVTIHEEQKKL
VKKWEGKFFKDHGFEPNNDDVNKNEDISLSLNKVKHCVAVLKSWSK
Run BLAST on NCBI

transcript from alignment at sc0002551:17506..21123-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040756 ID=TCONS_00040756|Name=TCONS_00040756|organism=Clytia hemisphaerica|type=transcript|length=3618bp|location=Sequence derived from alignment at sc0002551:17506..21123- (Clytia hemisphaerica)
TACAAATTTAAAGGAAGAGTTCGAAAAGGAGGTCGCTATTATTCTCGGAC
CAAAGGACAAATATCGTGGTGCTGACTTCCGTTTCTCTGCTATTGTTGTT
CACCGTCAAATGAAACCTAAATTTCCATCCGAAGTTTCTGATTTAACTTA
TTCGCTGGTTGAGATTTCTAGGCTTGTTTACCAACCTGCACTGAGACGAT
CTCCAAAATCAATTTTGAGGCTCTATACAATGTCTTTCTTGCATAGTATG
AGGTGTAAGCAAATCTTTGGTGAATATCCAAAATTATCTAAGTTTTATGG
TGAATACTATCACTCAATCATTGATCATTTTGCCTTTGTTCAAAGAATTG
TCGCCCCTTCATCTCTCCACACGGAAAGTGAAGAGCGACTATTTGGAACG
CTGCGATTGATAGGGCTGGCCACATCAGGAAGATCAGTAGAATCAGTTCG
TGATGTTGGTATAGTAAGGTAGACTTTTACGTTATTTCAGACAAAGATAA
ATTCTTCAGTGGAAATTTAGAGCTTATCAATGTTTTACGTTTTTAAGTCT
TAGTGATTTTTTAAAAGTTTAGCCTAGAGAAATAAAAAACTTTCAGAAAG
TGGTTTTGATGTTAANGAAGAAGAACTTAGCGAACGTGACACTTTGACTT
TATATGGAACACGTCAAGCAGGCAGTCGATACGAAGATCAACGACTTGGT
CTCTACCACGAATCAAAAGAAGAGGCAAAGGAAAGAACAGATACACGTAT
GAATATATATGAATATTAGTTTTTATTTACTTTTTCCACTAACGTAAGGA
GTGGTCAAGATCCATGAAACGAATCTAGTATGGGTTTCAATAAAACTTTA
AGGGGACGGTTAGATGTTGTGTACCTTCAAATCCTTCCAACAAGATTACC
ATGAACTGAAAAATACGATGAGGAGATTTNAGATAGCAAAATTAGCAAAG
CTGCTAAAGGCCTAGGTAAATTGAACTATAAGTTTAGAATTCAATTATTC
AGTAAAGACTGAAATACTTCAGAGAAGTTATCTCGCCTTCTTTTAAGATA
ATTAGAACATAGCTATATAATACAAGATATTTTTATGTTGAATGGCTAAG
CTGTTATTATTATTATTTGNTAGGACAATTGAAGGAAGATGAAGGTCTGG
TGAAGCGGAAAAAACATGCTCCAAGTCCACATAAAGTGAAATTTGATCGA
GCTGGATTACTTCGAAGGTCAAGACTGGCGTGCCTTCCTGCAACAAATCA
GTGACTTTTTGAAACACGATGAAGGAGTTTGGTGGAAAAGAGACGGCAAT
TATGTCGAATTTTTGGATGGTGAAGATGAAGATGATTTTCGCGAAGAAGG
TCCACGGTTGAAGGATTTTACTGATACAATGTTTTATGAAGTAAGTTAAC
TTTATTTTTTGGCTCATTTTTTCCCTGGCCAGTCAGAGGTGTGATTCTAT
TGGAAGTGATTATGAATCCCTTTTCTCTTTTGTGTCTAATTTTTGTGATT
TTCCCTCTGAAAATGAAGGTCATAATCAGTCATAAAAATGAAGGAGGTCT
TTAAAGTGATATTGAGTTGAGAAATCTGATAAATTGCTTTTTAAAAGAGT
ACANATAAAAATGAAGGAGGTCTTAAAGTGATATTGAGTTGAGAAATCTG
ATAAATCTCTTTTTAAAAGAGTACAAAGTACGAAATTCTGATTCAAATTT
TATTTTTCTTTAATTTAGCTTTACGAGCCTTTGAAGCAAGACTGGGAAGA
GTGTAAAAGGAACGGCGTTGCTGCGAAACTATTGGATAGCAGCTACATCG
ACGAAGGTATATTAGTTTCTTTTTCATAATCATAACTAAAACCATAAAGT
GGGGAGGATCATAATTAAATACTATGGGGTGATTCATTAATCTCTAATAA
AAATTTCTAATAAAAAGATATTAAACCTGCATATCCACCACTCATTCACA
CCTAAAACATTTCGNAATTAAATACTATGGGGTGATTCATTAATCTCTAA
TAAAAATTTCTAATAAAAAGATATTAAACCTGCATATCCACCACTCATTC
ACACCTATAACATTTCATTTTCTAAGACGATGATCCAGAAATTGAGGAGC
CAAGAAAAGAAAGTCCTCCACAAGAACGAGAGAACGAACAAGAAGAAGAA
CGCGTGGAAATCATTGAGGTTGCTGCAAATGTTGAGAGCGAGAGACCAGA
ATGTCCAGGTAAATACACCTTTTACGGTTAGCTGCTTTCTATAAAAAGTC
ACCAAAATTTCGAGTAAACAAACCATCTCATTGGCTAAAAGCAAAAACAG
GTGTATTGTATGATGTGTACAACTATAGTTAACTTAAGATTACTTCTGTT
TAAAAGTTATTTAATGCTAAAAATATCGAGTCAACGATTATTTTGCAATG
TTTTCTCCAAAATTATTTTTTTCTTTCAGTAAATACCATCAAACACGACC
TGTCACACACCCTCAAATCGAGTACTTCAAAAAGTCTTTACATCTTGTTC
GGTATGTGTGACGACATCAAAAACTTTGATCATCACCGAATGAAGCACCG
TACCGATAGAAATGAAAGATCTATGGAAATATGTCGGACAATCCAAAACA
GGTTAAGGCCTCAAATTGTTACCATCCATGAAGAACAGAAAAAATTGGTG
AAAAAGTGGGAAGGGAAATTCTTTAAAGATCATGGTTTCGAACCCAATAA
TGACGATGTTAATAAGAACGAAGATATTTCTCTATCTCTAAATAAAGTTA
AACACTGTGTCGCTGTCCTGAAGTCATGGAGCAAGTAGTAAAACATTTTG
TTTCCTCTTTTTATAACTTCACTATCTTTTAGATCTGTTTAGATCAAAGA
TATATTTCCTAGAAAAGTTATATAATTATTTATTTTCTATAGTTAGTTAC
GGTTCTACTTCTTTCATTATGGGAAAGTTATTTTTAACCGAGAAAAGATG
GTGGGAGATAAGATTTTTTTTGGGTACTCGGTGATTTCGCAGTATGGTCT
CCAAAATCATTCATTTTCTCACTAACTTATTTAAAATCCAGAAGAAATGC
ATGCTATTTGTCTGCTTTTTCAAATTTGAACCTTTTGTTTCATCATTATC
CGTTTCATTTTACTATATTTTATTAAGTTATTGATTGTTTCATATATTTC
ATTATTGAAACATGGTTCCACTATTTCATAATTTTATCATTCTTATAATT
AATAGACCACATTTTTTCGCATAGTGTCCTCAGAGACAAAAACTTTATTG
AAAGGGGGCAAAAATTAGTTGCAACTGAGAAAATCTCTAGGCGGGAAAAA
TTTTCAGGTTTCAAGCCAGTAAAATACAGCATTAATTTGGCATTTATGCT
TTTTTTAGGAAAAATTGTAAAAACGTACCTTTTTCAGAGACATCAAAAAA
TGCCAATCTTGGCTCAAGGCGGGATTGAGAAGGGGAACATTCTTTTTCAA
AATCTCAAGGGGGGGACTAAGGACATTATGTATTTTGTATCGTAGTTTTT
AGCAATTATATTTTAAACTAATTAGACTGTAATATTTGAATTTCAATGTA
ACATAATATTTAAGTAGCATTCATAAATTATTCATATAAGATATTTATTT
CATAAATTTTCATTTTAT

Coding sequence (CDS) from alignment at sc0002551:17506..21123-

>TCONS_00040756 ID=TCONS_00040756|Name=TCONS_00040756|organism=Clytia hemisphaerica|type=CDS|length=2364bp|location=Sequence derived from alignment at sc0002551:17506..21123- (Clytia hemisphaerica)
TAAATACCATCAAACACGACCTGTCACACACCCTCAAATCGAGTACTTCA
AAAAGTCTTTACATCTTGTTCGGTATGTGTGACGACATCAAAAACTTTGA
TCATCACCGAATGAAGCACCGTACCGATAGAAATGAAAGATCTATGGAAA
TATGTCGGACAATCCAAAACAGGTTAAGGCCTCAAATTGTTACCATCCAT
GAAGAACAGAAAAAATTGGTGAAAAAGTGGGAAGGGAAATTCTTTAAAGA
TCATGGTTTCGAACCCAATAATGACGATGTTAATAAGAACGAAGATATTT
CTCTATCTCTAAATAAAGTTAAACACTGTGTCGCTGTCCTGAAGTCATGG
AGCAAGTAGACGATGATCCAGAAATTGAGGAGCCAAGAAAAGAAAGTCCT
CCACAAGAACGAGAGAACGAACAAGAAGAAGAACGCGTGGAAATCATTGA
GGTTGCTGCAAATGTTGAGAGCGAGAGACCAGAATGTCCAGCTTTACGAG
CCTTTGAAGCAAGACTGGGAAGAGTGTAAAAGGAACGGCGTTGCTGCGAA
ACTATTGGATAGCAGCTACATCGACGAAGATGTTTTATGAATAAATACCA
TCAAACACGACCTGTCACACACCCTCAAATCGAGTACTTCAAAAAGTCTT
TACATCTTGTTCGGTATGTGTGACGACATCAAAAACTTTGATCATCACCG
AATGAAGCACCGTACCGATAGAAATGAAAGATCTATGGAAATATGTCGGA
CAATCCAAAACAGGTTAAGGCCTCAAATTGTTACCATCCATGAAGAACAG
AAAAAATTGGTGAAAAAGTGGGAAGGGAAATTCTTTAAAGATCATGGTTT
CGAACCCAATAATGACGATGTTAATAAGAACGAAGATATTTCTCTATCTC
TAAATAAAGTTAAACACTGTGTCGCTGTCCTGAAGTCATGGAGCAAGTAG
ACGATGATCCAGAAATTGAGGAGCCAAGAAAAGAAAGTCCTCCACAAGAA
CGAGAGAACGAACAAGAAGAAGAACGCGTGGAAATCATTGAGGTTGCTGC
AAATGTTGAGAGCGAGAGACCAGAATGTCCAGCTTTACGAGCCTTTGAAG
CAAGACTGGGAAGAGTGTAAAAGGAACGGCGTTGCTGCGAAACTATTGGA
TAGCAGCTACATCGACGAAGATGTTTTATGAATAAATACCATCAAACACG
ACCTGTCACACACCCTCAAATCGAGTACTTCAAAAAGTCTTTACATCTTG
TTCGGTATGTGTGACGACATCAAAAACTTTGATCATCACCGAATGAAGCA
CCGTACCGATAGAAATGAAAGATCTATGGAAATATGTCGGACAATCCAAA
ACAGGTTAAGGCCTCAAATTGTTACCATCCATGAAGAACAGAAAAAATTG
GTGAAAAAGTGGGAAGGGAAATTCTTTAAAGATCATGGTTTCGAACCCAA
TAATGACGATGTTAATAAGAACGAAGATATTTCTCTATCTCTAAATAAAG
TTAAACACTGTGTCGCTGTCCTGAAGTCATGGAGCAAGTAGACGATGATC
CAGAAATTGAGGAGCCAAGAAAAGAAAGTCCTCCACAAGAACGAGAGAAC
GAACAAGAAGAAGAACGCGTGGAAATCATTGAGGTTGCTGCAAATGTTGA
GAGCGAGAGACCAGAATGTCCAGCTTTACGAGCCTTTGAAGCAAGACTGG
GAAGAGTGTAAAAGGAACGGCGTTGCTGCGAAACTATTGGATAGCAGCTA
CATCGACGAAGATGTTTTATGAATAAATACCATCAAACACGACCTGTCAC
ACACCCTCAAATCGAGTACTTCAAAAAGTCTTTACATCTTGTTCGGTATG
TGTGACGACATCAAAAACTTTGATCATCACCGAATGAAGCACCGTACCGA
TAGAAATGAAAGATCTATGGAAATATGTCGGACAATCCAAAACAGGTTAA
GGCCTCAAATTGTTACCATCCATGAAGAACAGAAAAAATTGGTGAAAAAG
TGGGAAGGGAAATTCTTTAAAGATCATGGTTTCGAACCCAATAATGACGA
TGTTAATAAGAACGAAGATATTTCTCTATCTCTAAATAAAGTTAAACACT
GTGTCGCTGTCCTGAAGTCATGGAGCAAGTAGACGATGATCCAGAAATTG
AGGAGCCAAGAAAAGAAAGTCCTCCACAAGAACGAGAGAACGAACAAGAA
GAAGAACGCGTGGAAATCATTGAGGTTGCTGCAAATGTTGAGAGCGAGAG
ACCAGAATGTCCAGCTTTACGAGCCTTTGAAGCAAGACTGGGAAGAGTGT
AAAAGGAACGGCGTTGCTGCGAAACTATTGGATAGCAGCTACATCGACGA
AGATGTTTTATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024834XLOC_024834Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040756-exon-sc0002551-1575043694:20378..21123TCONS_00040756-exon-sc0002551-1575043694:20378..21123Clytia hemisphaericaexon
TCONS_00040756-exon-sc0002551-1575043694:19734..20000TCONS_00040756-exon-sc0002551-1575043694:19734..20000Clytia hemisphaericaexon
TCONS_00040756-exon-sc0002551-1575043694:19318..19405TCONS_00040756-exon-sc0002551-1575043694:19318..19405Clytia hemisphaericaexon
TCONS_00040756-exon-sc0002551-1575043694:18916..19047TCONS_00040756-exon-sc0002551-1575043694:18916..19047Clytia hemisphaericaexon
TCONS_00040756-exon-sc0002551-1575043694:17506..18694TCONS_00040756-exon-sc0002551-1575043694:17506..18694Clytia hemisphaericaexon
TCONS_00040756-exon-sc0002551-1510915933:20378..21123TCONS_00040756-exon-sc0002551-1510915933:20378..21123Clytia hemisphaericaexon
TCONS_00040756-exon-sc0002551-1510915933:19734..20000TCONS_00040756-exon-sc0002551-1510915933:19734..20000Clytia hemisphaericaexon
TCONS_00040756-exon-sc0002551-1510915933:19318..19405TCONS_00040756-exon-sc0002551-1510915933:19318..19405Clytia hemisphaericaexon
TCONS_00040756-exon-sc0002551-1510915933:18916..19047TCONS_00040756-exon-sc0002551-1510915933:18916..19047Clytia hemisphaericaexon
TCONS_00040756-exon-sc0002551-1510915933:17506..18694TCONS_00040756-exon-sc0002551-1510915933:17506..18694Clytia hemisphaericaexon
TCONS_00040756-exon-sc0002551-1491911889:20378..21123TCONS_00040756-exon-sc0002551-1491911889:20378..21123Clytia hemisphaericaexon
TCONS_00040756-exon-sc0002551-1491911889:19734..20000TCONS_00040756-exon-sc0002551-1491911889:19734..20000Clytia hemisphaericaexon
TCONS_00040756-exon-sc0002551-1491911889:19318..19405TCONS_00040756-exon-sc0002551-1491911889:19318..19405Clytia hemisphaericaexon
TCONS_00040756-exon-sc0002551-1491911889:18916..19047TCONS_00040756-exon-sc0002551-1491911889:18916..19047Clytia hemisphaericaexon
TCONS_00040756-exon-sc0002551-1491911889:17506..18694TCONS_00040756-exon-sc0002551-1491911889:17506..18694Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040756-proteinTCONS_00040756-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002551supercontigsc0002551:17506..21123 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.153583	0.108114	0.0802191	0.0177586	0.590923	0.458987	0.602989	0.4528	0.689535	0.3429	0.570931	0.462937	0.476433	0.523099	0.650492	0.838365	0.700738	1.0792	1.26918	1.01555	1.90909	2.42325	0.371589	0.536502	0.0512387	0.0743485	2.76533	2.49013	1.19932	1.0296
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040756 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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