TCONS_00040755 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040755
Unique NameTCONS_00040755
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040755 ID=TCONS_00040755|Name=TCONS_00040755|organism=Clytia hemisphaerica|type=transcript|length=555bp
ccagggggggtaccaagttgtggtactggaccagtgccgaaaagttgtac
tttcttgttttttgaaatttttctaagaccaccaccacttagtaccctgg
tactaagttgaatttaccccttaaaattAGTAGTAAGTACCCGTTACAAT
CTTGATGTCACCATTGAGAAATGACACACCACCGTTGAGTACACTTTACT
AAGTTGATTTTTCCCtcaaaataggtataccaccctTTAAAATTCCTATC
AAGTTAGGTCAAGACAAATATcattttaaagccaatttttttaggaccct
cccggcgctccggaaactTCTAGAGTTTTCCGGAGAATTTTTCTCTCTGG
AAAGTTCCGGAGCTCTTCCGGTGCTTTCAGAGCAAGTGATTCTTAACACA
GTACCGGAATTCCGGTGTCGACCAATCGCGGAAAATCGTGCTCCAGAATC
TTCCGGTGTTTCGGAGCACGAAAAAGACGGTACTTTTTGCTCCGGGTcct
attttttttatgaaaagaaaaagtttcaaatataaacaaatttaTAACAA
GCTTG
Run BLAST on NCBI

transcript from alignment at sc0002550:19932..20486

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040755 ID=TCONS_00040755|Name=TCONS_00040755|organism=Clytia hemisphaerica|type=transcript|length=555bp|location=Sequence derived from alignment at sc0002550:19932..20486 (Clytia hemisphaerica)
CAAGCTTGTTAtaaatttgtttatatttgaaactttttcttttcataaaa
aaaataggACCCGGAGCAAAAAGTACCGTCTTTTTCGTGCTCCGAAACAC
CGGAAGATTCTGGAGCACGATTTTCCGCGATTGGTCGACACCGGAATTCC
GGTACTGTGTTAAGAATCACTTGCTCTGAAAGCACCGGAAGAGCTCCGGA
ACTTTCCAGAGAGAAAAATTCTCCGGAAAACTCTAGAagtttccggagcg
ccgggagggtcctaaaaaaattggctttaaaatgATATTTGTCTTGACCT
AACTTGATAGGAATTTTAAagggtggtatacctattttgaGGGAAAAATC
AACTTAGTAAAGTGTACTCAACGGTGGTGTGTCATTTCTCAATGGTGACA
TCAAGATTGTAACGGGTACTTACTACTaattttaaggggtaaattcaact
tagtaccagggtactaagtggtggtggtcttagaaaaatttcaaaaaaca
agaaagtacaacttttcggcactggtccagtaccacaacttggtaccccc
cctgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024833XLOC_024833Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040755-exon-sc0002550-1491911889:19932..20486TCONS_00040755-exon-sc0002550-1491911889:19932..20486Clytia hemisphaericaexon
TCONS_00040755-exon-sc0002550-1510915933:19932..20486TCONS_00040755-exon-sc0002550-1510915933:19932..20486Clytia hemisphaericaexon
TCONS_00040755-exon-sc0002550-1575043694:19932..20486TCONS_00040755-exon-sc0002550-1575043694:19932..20486Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002550supercontigsc0002550:19932..20486 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.526763	0.871362	2.2017	3.1454	0.41483	0.702421	0.8238	1.52856	0.265711	0.669664	1.47422	0.620274	0.42284	0.289459	0.349343	0.479142	0.0826036	1.11174	0	0.456238	0.357344	0.531628	0.240573	0.547396	0.116887	0.420482	1.44486	0	0.23529	0.24022
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040755 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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