TCONS_00040750 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040750
Unique NameTCONS_00040750
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3565

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040750 ID=TCONS_00040750|Name=TCONS_00040750|organism=Clytia hemisphaerica|type=transcript|length=3565bp
GTGGAACTTGACATTGAGGGTCACACTTCTAAAATTATAAGCAACTGTTC
TCGTAAAACCATGGAAGATATGCATCAAATAGTTGTGGAGGATACTTTGA
ATGATCAACAAACCATCACCCCATACATTGGCATCAGTATATCAAAAAGT
GACGTCAGCCAGTTATCATCTATTCTAAAGCCATACCAAATCCTTCACAT
TTCATACAGTTGTGGTCAAACGTCATTGAATCCACAAACTctcacaaaaa
tacaaaatggtATAGTGTGTTTGACTATGGATGGGAATGTTTTACCAGAA
GAGATTGGTCACAATTTGTTAGGTTTGTTGAAAACATATTTGGAAGATCC
AACCAAGTTGCTTCTATGAGTGtcctttgtttcttttttattgcataatt
ttatttttgtttattaaaaCTAAATTATTATTTGAAATTCCACAGTTTGC
ACCGATCAACGTTTACCTGACCTTAGACAATTTTATGGTTTAAACCTGAA
CCCTGTAATGCTCCTATAATAAGGCTTCTCTAAATGTATACTCTCAAAAA
GTGAATATAAAGGACATGATTCTAAACAGATTACGAGACTTCGTttatta
ttacttttttgttttcctgcCAAAACAGAGTACTCGCGTAGGACGCACTG
TTTCACTATTTGTAAAACTAAGATGTCCAATTTTCCTTCCACTGCAAAAT
ACAATCAACTTTAtatatttcttaattttctttcattttacaatCCATTT
TGTTTTCTGGATTCTTTCTTGATACTCAGATTTAGGGGCTGTACAATCAT
TTCTGTCATAGCTGTTTTACCAAAAAGTTCTTTTGCTGtgttgattgttt
tctgaaGGCATCTTTTGGAAATATGTATCCAGGACAATAACACTAATAAA
AACCGCATCAATAATTTACCGATTCATGGGACTTCGCTTTTGTTCGTTCA
TCTTCCGTTTAGCAATAATGATCTGTCCAAAGCAGACGCCGAGGCGATTT
TCTTTTCCGTAAATGGTAAGAAGCATCTTTGACGGCCGGTAGTATCCCAC
CTCGACGGCCGGTAGTATCCCACCTCGACGGCCGGTAGTATCCCACCTCG
ACGGCCGGTAATATCCCACCTCGGCGACCGGTAGTATCCCATCTCGACGA
CTGGTAGTATCCCATCTCGACGGCCGGTAGTATCCCATCTCGACGACTGG
GAGTATCTTAAACTTTGTTTTCGCAGTTTTCAACGGTCGGAAGTATCTTA
TCTCGACGGTCGGAAGTATCATATATATAaatttctgcagagtcagcatt
tctttgttttgtgcAGAATCAACAGTCTTTCGACAACAAACCAAAATGGC
GGCTTTCTCTTATAAGCAGTTTATGGACGTCTTGCGGGACTTTGAGTCCA
ACTGATGACGATGTTTCCATCGAAAAACAgttataccgtattacttcgaa
taaacgtccccttcttttaaacgcccccttcgaataaTCGCCCCCTTTAG
GAAAGGGGCGTTTATTATAAACGTTTGACTTTAATACTTCGATACCAGNT
CATAAAATCTCCGCCCAATCTAATATTGGTTACCGCCCTCACTCGGATAG
TAAATCTAGGACATCGTCCTAAACTACCCCTGTTCAAAGCTACTCAATAA
GGCCTTTTGGAATTTCTCCCCTTTACCAGGATCAATTTTTCTGTTgtaaa
atttttggaaagtggACTCATTTGTCCAATTAGCTCTTTCTAAGATCTCC
CTCACAGAGATCCCCAGACTGGAAGCTTTAGAAGTGGTCGCTGATCTTGT
AGAATGTCCTTTAAAAATCTTAGTATCAATGCCAGCTAATCCAATTATCG
TTTTTAACCACCTTGAAACTGTGTCTGTAGAAACTCTTCTATATGGTTTG
ATATGTGATATTAGGAGTCTAGTTTCCGTTCCCCTTCGTTCCTTAGTTCT
AGACAAGAACTCGTCTATTGTATGGCACACACAAAGAGATAAGTTCTCCT
GAAATCTgaacaattttattttagtCGGCGAATCCCCAGGCTTTTGTGTT
TTAGTTACACCATCTAGTTCAAAGATGTAAACTGAAGAATACTTAGATAG
AAACTTTGTATCAAGAATGTTAAGTTCCGAAGCCCTGGATGCCCGGTTAA
GGCCAACAGTACTGTTAGTTTTAATGACAGTAACTTAATGTCTATTGTAG
AAGAATCTAGATCATTTATGTACCTAAGGACCGTTTCAACGTCCCAAGTG
AATCCATAACGAGGTTGAGGTGATCTCTTGTTGAAAATACCAACCATCAG
CCTTTTGACAAGAGGATGTTCCCCTATCGAAGACCCATCACAATTTTCAT
GAAAAGCTGAAATTGCTGATCTGTACCCACCTATAGTACTATATTGGAGT
CCCTTTGTACACAGATCAGTAAGAAAATCTAGAATATGCTTTACAGGACA
TCGAACGGGATCAATATGTTCCATACACCATNTTGCTGATCTGTACCCAC
CTATAGTACTATATTGGAGTCCCTTTGTACACAGATCAGTAAGAAAATCT
AGAATATGCTTTACAGGACATCGAACGGGATCAATCTTTTGTTCCATACA
CCAGCTAGCCCACTTTCCCCAGGCCGATTTGTAATGAGATTGAGTTCCTG
ATCTTCTGGAGTTGACGATAAGGTCCGAAGATTTCTCTGATACGCCTTTT
GAAGCAAGCTGTTCCCTGACAACATCCATGCAATCAGCCTGAGGGACCTG
TTCGAGACTAGAGGATGAACCCTTCCTTGATGCTTCAGAAGGTCTTCTTC
CATAGGTAAAAGAATTGGGTTCATTACTGACAATTGAAGTGCTATTGGAT
ACCAAGGCTGCCCCTGCCAGGCTGGTGTTATCAGAAGAACCATGGTTTGG
TCTGATACTATTTTCCTTAGCACCCTTCCTATTAGGGAGAAGGGGGGAAA
GGCATAACCTCTGACATTTCTCCAATCCTGTTGGAAGGCATCCTGCCCCT
GGCTGAAAGGATCCATTTTCCAAGAAAAATAAGCTGGAACCTGGTTCGAC
ACTCTGGATGCAAACAGATCTATGTCCGGGGTGCCCCTCACCTGACTCAG
TCTTCTGAATAGGGATGGTTTTAATTTCCATTCGCTGGAGTCCCTCCTTC
TGGATTCCGTGTCCGCCTCTATGTTCTTTTTCCCCGGGAGGTATTCGGCA
GTAAGGGTGATCTTGCCTGCCATCAAAAAATCCCAGATTTCCTTGCTTAT
CTGATTCATAGCGGCACTCTTGGTCCCCCCCATTTTTAGGAGATACTTCA
AGGCTACTGTATTGTCCATCTGAATATGAACCGACGTTACCCTGAACCTT
GGTATGAATGTCAATAGACCTATCCTGGCTGCTTTTAATTCCAAAACATT
TATATGTTCCTGCTGTTCCTCCAGAGACCATGGACCCCCTGTTCTTAAAC
TCCGACAAGCAGCTCCCCATCCTGTTTTGGAGGCATCCGTTTGGATTACT
ATCTGTGGAGGTGGGGTTATTAGACTCCTCCCATTGTAAAGTTCTAGGTT
CAAGAGCCACCaatt
Run BLAST on NCBI

transcript from alignment at sc0002549:209..4052-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040750 ID=TCONS_00040750|Name=TCONS_00040750|organism=Clytia hemisphaerica|type=transcript|length=3844bp|location=Sequence derived from alignment at sc0002549:209..4052- (Clytia hemisphaerica)
GTGGAACTTGACATTGAGGGTCACACTTCTAAAATTATAAGCAACTGTTC
TCGTAAAACCATGGAAGATATGCATCAAATAGTTGTGGAGGTAAGAAATC
TTTTTATCTTAAAGGTTTCCTGCAACCACGGATGTGATTAAAAAACGGCC
GAACACAGTTTACTAGCAAACGGCGACTGCGATTCACAACTTTAATTATT
TCAATAAAAGATTAAGATAAAAAAACGGGCCTTATTTTAAAAAGGAAGGG
CAGTGTCTGCTGGAGTGAAAAATAGTACAATTTCAGTGGCTCAAAAGGCA
TAAAAAGTCGTTTGATATTGATTGTTAAGTAAAGGAATTCCATCTGTTTA
ATATTATTGCCTATTGTAGGATACTTTGAATGATCAACAAACCATCACCC
CATACATTGGCATCAGTATATCAAAAAGTGACGTCAGCCAGTTATCATCT
ATTCTAAAGCCATACCAAATCCTTCACATTTCATACAGTTGTGGTCAAAC
GTCATTGAATCCACAAACTCTCACAAAAATACAAAATGGTATAGTGTGTT
TGACTATGGATGGGAATGTTTTACCAGAAGAGATTGGTCACAATTTGTTA
GGTTTGTTGAAAACATATTTGGAAGATCCAACCAAGTTGCTTCTATGAGT
GTCCTTTGTTTCTTTTTTATTGCATAATTTTATTTTTGTTTATTAAAACT
AAATTATTATTTGAAATTCCACAGTTTGCACCGATCAACGTTTACCTGAC
CTTAGACAATTTTATGGTTTAAACCTGAACCCTGTAATGCTCCTATAATA
AGGCTTCTCTAAATGTATACTCTCAAAAAGTGAATATAAAGGACATGATT
CTAAACAGATTACGAGACTTCGTTTATTATTACTTTTTTGTTTTCCTGCC
AAAACAGAGTACTCGCGTAGGACGCACTGTTTCACTATTTGTAAAACTAA
GATGTCCAATTTTCCTTCCACTGCAAAATACAATCAACTTTATATATTTC
TTAATTTTCTTTCATTTTACAATCCATTTTGTTTTCTGGATTCTTTCTTG
ATACTCAGATTTAGGGGCTGTACAATCATTTCTGTCATAGCTGTTTTACC
AAAAAGTTCTTTTGCTGTGTTGATTGTTTTCTGAAGGCATCTTTTGGAAA
TATGTATCCAGGACAATAACACTAATAAAAACCGCATCAATAATTTACCG
ATTCATGGGACTTCGCTTTTGTTCGTTCATCTTCCGTTTAGCAATAATGA
TCTGTCCAAAGCAGACGCCGAGGCGATTTTCTTTTCCGTAAATGGTAAGA
AGCATCTTTGACGGCCGGTAGTATCCCACCTCGACGGCCGGTAGTATCCC
ACCTCGACGGCCGGTAGTATCCCACCTCGACGGCCGGTAATATCCCACCT
CGGCGACCGGTAGTATCCCATCTCGACGACTGGTAGTATCCCATCTCGAC
GGCCGGTAGTATCCCATCTCGACGACTGGGAGTATCTTAAACTTTGTTTT
CGCAGTTTTCAACGGTCGGAAGTATCTTATCTCGACGGTCGGAAGTATCA
TATATATAAATTTCTGCAGAGTCAGCATTTCTTTGTTTTGTGCAGAATCA
ACAGTCTTTCGACAACAAACCAAAATGGCGGCTTTCTCTTATAAGCAGTT
TATGGACGTCTTGCGGGACTTTGAGTCCAACTGATGACGATGTTTCCATC
GAAAAACAGTTATACCGTATTACTTCGAATAAACGTCCCCTTCTTTTAAA
CGCCCCCTTCGAATAATCGCCCCCTTTAGGAAAGGGGCGTTTATTATAAA
CGTTTGACTTTAATACTTCGATACCAGNTCATAAAATCTCCGCCCAATCT
AATATTGGTTACCGCCCTCACTCGGATAGTAAATCTAGGACATCGTCCTA
AACTACCCCTGTTCAAAGCTACTCAATAAGGCCTTTTGGAATTTCTCCCC
TTTACCAGGATCAATTTTTCTGTTGTAAAATTTTTGGAAAGTGGACTCAT
TTGTCCAATTAGCTCTTTCTAAGATCTCCCTCACAGAGATCCCCAGACTG
GAAGCTTTAGAAGTGGTCGCTGATCTTGTAGAATGTCCTTTAAAAATCTT
AGTATCAATGCCAGCTAATCCAATTATCGTTTTTAACCACCTTGAAACTG
TGTCTGTAGAAACTCTTCTATATGGTTTGATATGTGATATTAGGAGTCTA
GTTTCCGTTCCCCTTCGTTCCTTAGTTCTAGACAAGAACTCGTCTATTGT
ATGGCACACACAAAGAGATAAGTTCTCCTGAAATCTGAACAATTTTATTT
TAGTCGGCGAATCCCCAGGCTTTTGTGTTTTAGTTACACCATCTAGTTCA
AAGATGTAAACTGAAGAATACTTAGATAGAAACTTTGTATCAAGAATGTT
AAGTTCCGAAGCCCTGGATGCCCGGTTAAGGCCAACAGTACTGTTAGTTT
TAATGACAGTAACTTAATGTCTATTGTAGAAGAATCTAGATCATTTATGT
ACCTAAGGACCGTTTCAACGTCCCAAGTGAATCCATAACGAGGTTGAGGT
GATCTCTTGTTGAAAATACCAACCATCAGCCTTTTGACAAGAGGATGTTC
CCCTATCGAAGACCCATCACAATTTTCATGAAAAGCTGAAATTGCTGATC
TGTACCCACCTATAGTACTATATTGGAGTCCCTTTGTACACAGATCAGTA
AGAAAATCTAGAATATGCTTTACAGGACATCGAACGGGATCAATATGTTC
CATACACCATNTTGCTGATCTGTACCCACCTATAGTACTATATTGGAGTC
CCTTTGTACACAGATCAGTAAGAAAATCTAGAATATGCTTTACAGGACAT
CGAACGGGATCAATCTTTTGTTCCATACACCAGCTAGCCCACTTTCCCCA
GGCCGATTTGTAATGAGATTGAGTTCCTGATCTTCTGGAGTTGACGATAA
GGTCCGAAGATTTCTCTGATACGCCTTTTGAAGCAAGCTGTTCCCTGACA
ACATCCATGCAATCAGCCTGAGGGACCTGTTCGAGACTAGAGGATGAACC
CTTCCTTGATGCTTCAGAAGGTCTTCTTCCATAGGTAAAAGAATTGGGTT
CATTACTGACAATTGAAGTGCTATTGGATACCAAGGCTGCCCCTGCCAGG
CTGGTGTTATCAGAAGAACCATGGTTTGGTCTGATACTATTTTCCTTAGC
ACCCTTCCTATTAGGGAGAAGGGGGGAAAGGCATAACCTCTGACATTTCT
CCAATCCTGTTGGAAGGCATCCTGCCCCTGGCTGAAAGGATCCATTTTCC
AAGAAAAATAAGCTGGAACCTGGTTCGACACTCTGGATGCAAACAGATCT
ATGTCCGGGGTGCCCCTCACCTGACTCAGTCTTCTGAATAGGGATGGTTT
TAATTTCCATTCGCTGGAGTCCCTCCTTCTGGATTCCGTGTCCGCCTCTA
TGTTCTTTTTCCCCGGGAGGTATTCGGCAGTAAGGGTGATCTTGCCTGCC
ATCAAAAAATCCCAGATTTCCTTGCTTATCTGATTCATAGCGGCACTCTT
GGTCCCCCCCATTTTTAGGAGATACTTCAAGGCTACTGTATTGTCCATCT
GAATATGAACCGACGTTACCCTGAACCTTGGTATGAATGTCAATAGACCT
ATCCTGGCTGCTTTTAATTCCAAAACATTTATATGTTCCTGCTGTTCCTC
CAGAGACCATGGACCCCCTGTTCTTAAACTCCGACAAGCAGCTCCCCATC
CTGTTTTGGAGGCATCCGTTTGGATTACTATCTGTGGAGGTGGGGTTATT
AGACTCCTCCCATTGTAAAGTTCTAGGTTCAAGAGCCACCAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024831XLOC_024831Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040750-exon-sc0002549-1575043694:3963..4052TCONS_00040750-exon-sc0002549-1575043694:3963..4052Clytia hemisphaericaexon
TCONS_00040750-exon-sc0002549-1575043694:209..3683TCONS_00040750-exon-sc0002549-1575043694:209..3683Clytia hemisphaericaexon
TCONS_00040750-exon-sc0002549-1510915933:3963..4052TCONS_00040750-exon-sc0002549-1510915933:3963..4052Clytia hemisphaericaexon
TCONS_00040750-exon-sc0002549-1510915933:209..3683TCONS_00040750-exon-sc0002549-1510915933:209..3683Clytia hemisphaericaexon
TCONS_00040750-exon-sc0002549-1491911889:3963..4052TCONS_00040750-exon-sc0002549-1491911889:3963..4052Clytia hemisphaericaexon
TCONS_00040750-exon-sc0002549-1491911889:209..3683TCONS_00040750-exon-sc0002549-1491911889:209..3683Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002549supercontigsc0002549:209..4052 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.64533	1.56932	1.14108	0.948998	0.493878	0.669323	0.742635	1.06003	0.551034	0.826886	0.678349	0.701422	1.01762	1.65307	0.257459	0.550435	0.620196	0.619441	0.951413	0.4271	0.756229	0.677165	1.49232	1.25738	1.89089	2.35082	3.41428	3.86751	0.61014	0.777633
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023109Integrase_recombinase_N
IPR010998Integrase_Lambda-type_N
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040750 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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