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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040749 ID=TCONS_00040749|Name=TCONS_00040749|organism=Clytia hemisphaerica|type=transcript|length=2321bp
AAACTTTCGAATTTCTGATTGAGCTATCATTTTGAGCAACATCACGTATT
GCTGGGTTATCTTTACGAGATAACATTGATCGTTGTCTTCCTAAATAGTT
TTCAAGAGGATCTTGACAAAACTNATTACTACCAGAGATAGGATTGAAAA
CTTTCGAATTTCTGATTGAGCTATCATTTTGAGCAACATCACGTATTGCT
GGGTTATCTTTACGAGATAACATTGATCGTTGTCTTCCAAAATAGTTTTC
AAGAGGATCTTGACAAAACCTTTCGGAAAGAACATAGCTACAAATATGGT
TATCGAGAAGAAACTCAACACATCCAACAAGAGAGTGGACAGTAATCTTG
ATGCCTTCGTACGTTTGGGAAGAAATAAACATTTTGTTACGAGCAGTTTT
GTCATAATTGCCTGGCCGAGATTGAATTGAATTCAACCAACTGTCAAAAT
AGCTGAGAAATTCACCCTTCAACCAAGTTAAACGCCCTCCAGTAGCTGAT
CTGATCGGTTCTCGGTCTGGCTTTATTTGAAGGTGATGTTGCTGGTCGTC
CTTTGTATTGACAATGTCAAAAAATCTGTCCatgattttgcaaaatttag
cTGTTTCTCGTTCTTCAGCTGTACCATACGTATTTATAATATCAGAAACT
CGCAGACTCAGGACCTGGGCAGCAAGCCGTACATTCATTTTAGAATATGG
AGTGAGCTCAATGTGATCATACGTTAAATTTGGTAACCAGTTCAGACCGG
TCTCAACATCCTCATAAAATAATCGTGCAATATGATTCCACATTAAAAAA
CAACCGTTGTTTCACATAAGGCGCGTAGCTTTACCATCACCAGAATTTGC
CAGACAATTACGAGCAGTTTTAATCAGATGTGGAGGAtctgcaaaaaaaa
tacaaatacatGCGAATACTTTCTTTGCTGAATGGATTTGGTGTACGATA
AATGACGTCAACATTATTACTGGCTGCATCATCAGCTTGTAGcttgaaat
gcatgtcaaatAATTTTCGATTAGAGGATGCACCATCACAAGTGACTGCT
AGAACTCTGATATCATTGGACTCGCAAATTGAAACAGCCTTCCACAATAA
AGGGAACAATTGGCAACCGGTAGCACCGGTTGTAGCAAAATTAGCAAAAC
TGAACTTAATTGGGTTAATAATGCCTCTCAACATAAAGACAAGAACATGT
GTAGCAATATTATCAACTTTTTGCAATGTGGAATAATTCACAGCTGGATC
ACCCAGATCCGCATACCCGATGAGCTCACCAGTATGTTTATCCCATACGA
GATTTTCTTGAACCTTCATCTCGTCAAGTAAAAGAACAACATAACGCTCT
GGATCActaaaatgtttcattttcgttttgagTTCTTGAATAATACCCTT
GTTGAAACCACGCTGAGGTTTTATATAATTCCGGTAATCTCGTAATCTTC
TCTGGCTAGGTAAGATCAAGACACCTGTACCATCCTTCTCATTGTACCGT
AAATCCTCATATGCCGATGATGATTTTACAGCTAACGATAGGCAGTAGCG
AATGATCATAGGGTGATACCGAACACTTTTAGAGGAAGTTTGCAAATACT
TTTGTTTTTCCTCCCAAAATAACTTCATGAATGGTGATACTCTGCTGGGA
TCGGCACGGGACATAATTGAAACAATATCACTATTTTCTATACCATCACA
CTGAATAGACTTTGTTTGTAATTCATGTTCTAATTTTCTACGTAAAGTTT
CAATTTCGATTTTCAATTCTGTGTTTTCAATACGATATCNTTTACGTAAA
GTTTCAATTTCGATTTTCAATTCTGTGTTTTCAATACGATATCCTTGCAT
AGTCAGCTTTAGACGTGCTGAAGAGGTTGAACTTATTGGGGCTTGCAATT
TAGCAGGTTCAGTAAGTCTTTCGGATTTGCGTTTAAGATATTGGGAATGA
GAAGCTTCCTTCTTGATGCAGACAGCACACTTTTCGGTAGAATCCAAGAT
CAGACATTCTTTTGGtcgcaaaaaagtttttgatttgataggaTCTGAGT
TAGAATTAACGGTATAGATTTGTGAAACAGTATGTGAAAGAATAACGTCA
GTTTGATAAGAAACTCCCTCGCAAATTAACATTTTCTCCAAAGCATTTAC
CAATACCGAGAGTGTTACATTTTTGAATGATGAACCAAAGGTCTCATGTA
ATTTATTATTCTTAGGAACCAACCAATTGTAAACAAGAATATTGAATGTC
AAATCACTTTCAATAATTATTTGATATTTAGGAATGATGTATGTCATGTC
ACTTTTCTCCAAGTAGATTGT Run BLAST on NCBI protein sequence of TCONS_00040749-protein >TCONS_00040749-protein ID=TCONS_00040749-protein|Name=TCONS_00040749-protein|organism=Clytia hemisphaerica|type=polypeptide|length=483bp
TIYLEKSDMTYIIPKYQIIIESDLTFNILVYNWLVPKNNKLHETFGSSFK
NVTLSVLVNALEKMLICEGVSYQTDVILSHTVSQIYTVNSNSDPIKSKTF
LRPKECLILDSTEKCAVCIKKEASHSQYLKRKSERLTEPAKLQAPISSTS
SARLKLTMQGYRIENTELKIEIETLRKXYRIENTELKIEIETLRRKLEHE
LQTKSIQCDGIENSDIVSIMSRADPSRVSPFMKLFWEEKQKYLQTSSKSV
RYHPMIIRYCLSLAVKSSSAYEDLRYNEKDGTGVLILPSQRRLRDYRNYI
KPQRGFNKGIIQELKTKMKHFSDPERYVVLLLDEMKVQENLVWDKHTGEL
IGYADLGDPAVNYSTLQKVDNIATHVLVFMLRGIINPIKFSFANFATTGA
TGCQLFPLLWKAVSICESNDIRVLAVTCDGASSNRKLFDMHFKLQADDAA
SNNVDVIYRTPNPFSKESIRMYLYFFCRSSTSD Run BLAST on NCBI transcript from alignment at sc0002547:19041..21361 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040749 ID=TCONS_00040749|Name=TCONS_00040749|organism=Clytia hemisphaerica|type=transcript|length=2321bp|location=Sequence derived from alignment at sc0002547:19041..21361 (Clytia hemisphaerica)
ACAATCTACTTGGAGAAAAGTGACATGACATACATCATTCCTAAATATCA
AATAATTATTGAAAGTGATTTGACATTCAATATTCTTGTTTACAATTGGT
TGGTTCCTAAGAATAATAAATTACATGAGACCTTTGGTTCATCATTCAAA
AATGTAACACTCTCGGTATTGGTAAATGCTTTGGAGAAAATGTTAATTTG
CGAGGGAGTTTCTTATCAAACTGACGTTATTCTTTCACATACTGTTTCAC
AAATCTATACCGTTAATTCTAACTCAGAtcctatcaaatcaaaaactttt
ttgcgaCCAAAAGAATGTCTGATCTTGGATTCTACCGAAAAGTGTGCTGT
CTGCATCAAGAAGGAAGCTTCTCATTCCCAATATCTTAAACGCAAATCCG
AAAGACTTACTGAACCTGCTAAATTGCAAGCCCCAATAAGTTCAACCTCT
TCAGCACGTCTAAAGCTGACTATGCAAGGATATCGTATTGAAAACACAGA
ATTGAAAATCGAAATTGAAACTTTACGTAAANGATATCGTATTGAAAACA
CAGAATTGAAAATCGAAATTGAAACTTTACGTAGAAAATTAGAACATGAA
TTACAAACAAAGTCTATTCAGTGTGATGGTATAGAAAATAGTGATATTGT
TTCAATTATGTCCCGTGCCGATCCCAGCAGAGTATCACCATTCATGAAGT
TATTTTGGGAGGAAAAACAAAAGTATTTGCAAACTTCCTCTAAAAGTGTT
CGGTATCACCCTATGATCATTCGCTACTGCCTATCGTTAGCTGTAAAATC
ATCATCGGCATATGAGGATTTACGGTACAATGAGAAGGATGGTACAGGTG
TCTTGATCTTACCTAGCCAGAGAAGATTACGAGATTACCGGAATTATATA
AAACCTCAGCGTGGTTTCAACAAGGGTATTATTCAAGAActcaaaacgaa
aatgaaacattttagTGATCCAGAGCGTTATGTTGTTCTTTTACTTGACG
AGATGAAGGTTCAAGAAAATCTCGTATGGGATAAACATACTGGTGAGCTC
ATCGGGTATGCGGATCTGGGTGATCCAGCTGTGAATTATTCCACATTGCA
AAAAGTTGATAATATTGCTACACATGTTCTTGTCTTTATGTTGAGAGGCA
TTATTAACCCAATTAAGTTCAGTTTTGCTAATTTTGCTACAACCGGTGCT
ACCGGTTGCCAATTGTTCCCTTTATTGTGGAAGGCTGTTTCAATTTGCGA
GTCCAATGATATCAGAGTTCTAGCAGTCACTTGTGATGGTGCATCCTCTA
ATCGAAAATTatttgacatgcatttcaagCTACAAGCTGATGATGCAGCC
AGTAATAATGTTGACGTCATTTATCGTACACCAAATCCATTCAGCAAAGA
AAGTATTCGCatgtatttgtattttttttgcagaTCCTCCACATCTGATT
AAAACTGCTCGTAATTGTCTGGCAAATTCTGGTGATGGTAAAGCTACGCG
CCTTATGTGAAACAACGGTTGTTTTTTAATGTGGAATCATATTGCACGAT
TATTTTATGAGGATGTTGAGACCGGTCTGAACTGGTTACCAAATTTAACG
TATGATCACATTGAGCTCACTCCATATTCTAAAATGAATGTACGGCTTGC
TGCCCAGGTCCTGAGTCTGCGAGTTTCTGATATTATAAATACGTATGGTA
CAGCTGAAGAACGAGAAACAgctaaattttgcaaaatcatGGACAGATTT
TTTGACATTGTCAATACAAAGGACGACCAGCAACATCACCTTCAAATAAA
GCCAGACCGAGAACCGATCAGATCAGCTACTGGAGGGCGTTTAACTTGGT
TGAAGGGTGAATTTCTCAGCTATTTTGACAGTTGGTTGAATTCAATTCAA
TCTCGGCCAGGCAATTATGACAAAACTGCTCGTAACAAAATGTTTATTTC
TTCCCAAACGTACGAAGGCATCAAGATTACTGTCCACTCTCTTGTTGGAT
GTGTTGAGTTTCTTCTCGATAACCATATTTGTAGCTATGTTCTTTCCGAA
AGGTTTTGTCAAGATCCTCTTGAAAACTATTTTGGAAGACAACGATCAAT
GTTATCTCGTAAAGATAACCCAGCAATACGTGATGTTGCTCAAAATGATA
GCTCAATCAGAAATTCGAAAGTTTTCAATCCTATCTCTGGTAGTAATNAG
TTTTGTCAAGATCCTCTTGAAAACTATTTAGGAAGACAACGATCAATGTT
ATCTCGTAAAGATAACCCAGCAATACGTGATGTTGCTCAAAATGATAGCT
CAATCAGAAATTCGAAAGTTT Coding sequence (CDS) from alignment at sc0002547:19041..21361 >TCONS_00040749 ID=TCONS_00040749|Name=TCONS_00040749|organism=Clytia hemisphaerica|type=CDS|length=1452bp|location=Sequence derived from alignment at sc0002547:19041..21361 (Clytia hemisphaerica)
ACAATCTACTTGGAGAAAAGTGACATGACATACATCATTCCTAAATATCA
AATAATTATTGAAAGTGATTTGACATTCAATATTCTTGTTTACAATTGGT
TGGTTCCTAAGAATAATAAATTACATGAGACCTTTGGTTCATCATTCAAA
AATGTAACACTCTCGGTATTGGTAAATGCTTTGGAGAAAATGTTAATTTG
CGAGGGAGTTTCTTATCAAACTGACGTTATTCTTTCACATACTGTTTCAC
AAATCTATACCGTTAATTCTAACTCAGAtcctatcaaatcaaaaactttt
ttgcgaCCAAAAGAATGTCTGATCTTGGATTCTACCGAAAAGTGTGCTGT
CTGCATCAAGAAGGAAGCTTCTCATTCCCAATATCTTAAACGCAAATCCG
AAAGACTTACTGAACCTGCTAAATTGCAAGCCCCAATAAGTTCAACCTCT
TCAGCACGTCTAAAGCTGACTATGCAAGGATATCGTATTGAAAACACAGA
ATTGAAAATCGAAATTGAAACTTTACGTAAANGATATCGTATTGAAAACA
CAGAATTGAAAATCGAAATTGAAACTTTACGTAGAAAATTAGAACATGAA
TTACAAACAAAGTCTATTCAGTGTGATGGTATAGAAAATAGTGATATTGT
TTCAATTATGTCCCGTGCCGATCCCAGCAGAGTATCACCATTCATGAAGT
TATTTTGGGAGGAAAAACAAAAGTATTTGCAAACTTCCTCTAAAAGTGTT
CGGTATCACCCTATGATCATTCGCTACTGCCTATCGTTAGCTGTAAAATC
ATCATCGGCATATGAGGATTTACGGTACAATGAGAAGGATGGTACAGGTG
TCTTGATCTTACCTAGCCAGAGAAGATTACGAGATTACCGGAATTATATA
AAACCTCAGCGTGGTTTCAACAAGGGTATTATTCAAGAActcaaaacgaa
aatgaaacattttagTGATCCAGAGCGTTATGTTGTTCTTTTACTTGACG
AGATGAAGGTTCAAGAAAATCTCGTATGGGATAAACATACTGGTGAGCTC
ATCGGGTATGCGGATCTGGGTGATCCAGCTGTGAATTATTCCACATTGCA
AAAAGTTGATAATATTGCTACACATGTTCTTGTCTTTATGTTGAGAGGCA
TTATTAACCCAATTAAGTTCAGTTTTGCTAATTTTGCTACAACCGGTGCT
ACCGGTTGCCAATTGTTCCCTTTATTGTGGAAGGCTGTTTCAATTTGCGA
GTCCAATGATATCAGAGTTCTAGCAGTCACTTGTGATGGTGCATCCTCTA
ATCGAAAATTatttgacatgcatttcaagCTACAAGCTGATGATGCAGCC
AGTAATAATGTTGACGTCATTTATCGTACACCAAATCCATTCAGCAAAGA
AAGTATTCGCatgtatttgtattttttttgcagaTCCTCCACATCTGATT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040749-exon-sc0002547-1491911889:19041..21361 | TCONS_00040749-exon-sc0002547-1491911889:19041..21361 | Clytia hemisphaerica | exon |
| TCONS_00040749-exon-sc0002547-1510915933:19041..21361 | TCONS_00040749-exon-sc0002547-1510915933:19041..21361 | Clytia hemisphaerica | exon |
| TCONS_00040749-exon-sc0002547-1575043694:19041..21361 | TCONS_00040749-exon-sc0002547-1575043694:19041..21361 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002547 | supercontig | sc0002547:19041..21361 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021896 | Transposase_37 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004803 | transposase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006313 | transposition, DNA-mediated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006313 |
transposition, DNA-mediated |
| molecular_function |
GO:0004803 |
transposase activity |
Blast
The following BLAST results are available for this feature:
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