TCONS_00040740 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040740
Unique NameTCONS_00040740
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040740 ID=TCONS_00040740|Name=TCONS_00040740|organism=Clytia hemisphaerica|type=transcript|length=609bp
gctttatcgACTCTAAcataaaggcttcaaaattttggatgttcttatta
aaagaaACGTGTAATACATTTTACAATAATATTCCggtcaaaaaaatgaa
atatggaaaaagttccaacgTCATACTAACGTAATAATAACGTTCTAAAA
TGTCCACTGTCAATATATAAAAAGCTTCAATTGGTAAATTTCTGGTCGAA
ATAATATGATAGTCTCCACCAAGATTGTTTCAACAAGCAATTCAACAAAC
CACGATGGAATACGGAGAATTCATATTCGTATGTATGAGCCCTGCAAATG
CTGCAACGGCAATTTTACTCAATTTGTTGGTGATGTTCTACATATGGAAG
ATGAAATTATTGGCCAAAAACAGATCAATAGTTCTCTTCATGAATTTGTC
ATTGGCTGATATTCTGTTAGGCTTGACCATAAGTGCAATTAAAGTGATTG
GTATATTCAAGCTACCTCCTGATCATATTCTAAATCTGGTCAAACAATAT
CTAGCCAGCTCTTTCATACAAATCTCATTGCTGGTATCTATCTCAACTAA
CATTATTGTTACCTCTGAGCGATTATTGTTGGTTAAGCAACCATTTATTT
ATCGTCAAA
Run BLAST on NCBI

protein sequence of TCONS_00040740-protein

>TCONS_00040740-protein ID=TCONS_00040740-protein|Name=TCONS_00040740-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MEYGEFIFVCMSPANAATAILLNLLVMFYIWKMKLLAKNRSIVLFMNLSL
ADILLGLTISAIKVIGIFKLPPDHILNLVKQYLASSFIQISLLVSISTNI
IVTSERLLLVKQPFIYRQ
Run BLAST on NCBI

transcript from alignment at sc0002543:16479..17087

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040740 ID=TCONS_00040740|Name=TCONS_00040740|organism=Clytia hemisphaerica|type=transcript|length=609bp|location=Sequence derived from alignment at sc0002543:16479..17087 (Clytia hemisphaerica)
TTTGACGATAAATAAATGGTTGCTTAACCAACAATAATCGCTCAGAGGTA
ACAATAATGTTAGTTGAGATAGATACCAGCAATGAGATTTGTATGAAAGA
GCTGGCTAGATATTGTTTGACCAGATTTAGAATATGATCAGGAGGTAGCT
TGAATATACCAATCACTTTAATTGCACTTATGGTCAAGCCTAACAGAATA
TCAGCCAATGACAAATTCATGAAGAGAACTATTGATCTGTTTTTGGCCAA
TAATTTCATCTTCCATATGTAGAACATCACCAACAAATTGAGTAAAATTG
CCGTTGCAGCATTTGCAGGGCTCATACATACGAATATGAATTCTCCGTAT
TCCATCGTGGTTTGTTGAATTGCTTGTTGAAACAATCTTGGTGGAGACTA
TCATATTATTTCGACCAGAAATTTACCAATTGAAGCTTTTTATATATTGA
CAGTGGACATTTTAGAACGTTATTATTACGTTAGTATGAcgttggaactt
tttccatatttcatttttttgaccGGAATATTATTGTAAAATGTATTACA
CGTttcttttaataagaacatccaaaattttgaagcctttatgTTAGAGT
cgataaagc

Coding sequence (CDS) from alignment at sc0002543:16479..17087

>TCONS_00040740 ID=TCONS_00040740|Name=TCONS_00040740|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at sc0002543:16479..17087 (Clytia hemisphaerica)
TTGACGATAAATAAATGGTTGCTTAACCAACAATAATCGCTCAGAGGTAA
CAATAATGTTAGTTGAGATAGATACCAGCAATGAGATTTGTATGAAAGAG
CTGGCTAGATATTGTTTGACCAGATTTAGAATATGATCAGGAGGTAGCTT
GAATATACCAATCACTTTAATTGCACTTATGGTCAAGCCTAACAGAATAT
CAGCCAATGACAAATTCATGAAGAGAACTATTGATCTGTTTTTGGCCAAT
AATTTCATCTTCCATATGTAGAACATCACCAACAAATTGAGTAAAATTGC
CGTTGCAGCATTTGCAGGGCTCATACATACGAATATGAATTCTCCGTATT
CCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024821XLOC_024821Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040740-proteinTCONS_00040740-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040740-exon-sc0002543-1491911889:16479..17087TCONS_00040740-exon-sc0002543-1491911889:16479..17087Clytia hemisphaericaexon
TCONS_00040740-exon-sc0002543-1510915933:16479..17087TCONS_00040740-exon-sc0002543-1510915933:16479..17087Clytia hemisphaericaexon
TCONS_00040740-exon-sc0002543-1575043694:16479..17087TCONS_00040740-exon-sc0002543-1575043694:16479..17087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002543supercontigsc0002543:16479..17087 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.77389	1.64333	0.401697	0.491247	0.956874	0.850652	0.456122	0.747278	4.1855	4.07347	1.34789	4.01676	0.117976	0	0	0	0	0	0	0	0.0857547	0.125484	1.72882	1.6642	0	0	0	0.389381	0.885994	1.00299
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top