TCONS_00040739 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040739
Unique NameTCONS_00040739
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040739 ID=TCONS_00040739|Name=TCONS_00040739|organism=Clytia hemisphaerica|type=transcript|length=291bp
NNAGATGGTGAAGGAGGGTGAAACATTGGGTAGTGATGACTGCAAGGTTC
TCGGTATTCCTTGGAATCCAAGATCTGacgttttcttcttttctttacat
gaatttgcttcgaaatttcttGATATGGTTGTGACCAAGAGAAATGTTGT
TTCGGTAGTGGCTCAACTCTTTGACCCTCTCGGTCTTCTTTCACCTGCTT
TTATAACAGCCAAAGTTCTTCTCCAGAAAATTCACAAGTCCAGCTCCGAC
TGGGATAAGGTTGTTGAGAAAGATCTCCAAGATGAGTGGNN
Run BLAST on NCBI

transcript from alignment at sc0002543:6393..6683

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040739 ID=TCONS_00040739|Name=TCONS_00040739|organism=Clytia hemisphaerica|type=transcript|length=291bp|location=Sequence derived from alignment at sc0002543:6393..6683 (Clytia hemisphaerica)
NNCCACTCATCTTGGAGATCTTTCTCAACAACCTTATCCCAGTCGGAGCT
GGACTTGTGAATTTTCTGGAGAAGAACTTTGGCTGTTATAAAAGCAGGTG
AAAGAAGACCGAGAGGGTCAAAGAGTTGAGCCACTACCGAAACAACATTT
CTCTTGGTCACAACCATATCaagaaatttcgaagcaaattcatgtaaaga
aaagaagaaaacgtCAGATCTTGGATTCCAAGGAATACCGAGAACCTTGC
AGTCATCACTACCCAATGTTTCACCCTCCTTCACCATCTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024820XLOC_024820Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040739-exon-sc0002543-1491911889:6393..6683TCONS_00040739-exon-sc0002543-1491911889:6393..6683Clytia hemisphaericaexon
TCONS_00040739-exon-sc0002543-1510915933:6393..6683TCONS_00040739-exon-sc0002543-1510915933:6393..6683Clytia hemisphaericaexon
TCONS_00040739-exon-sc0002543-1575043694:6393..6683TCONS_00040739-exon-sc0002543-1575043694:6393..6683Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002543supercontigsc0002543:6393..6683 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.72432	0.840741	0.488091	0	81.3869	64.313	43.7835	63.3003	25.4284	62.0944	16.1594	22.6806	1.72019	6.2525	3.67172	7.09257	11.3263	14.5943	2.29124	1.91809	8.75264	7.31868	1.97707	2.69617	1.85132	2.06533	2.36438	0.630833	0	1.46244
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040739 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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