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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040737 ID=TCONS_00040737|Name=TCONS_00040737|organism=Clytia hemisphaerica|type=transcript|length=3036bp
TCATTTGGATTGTCGTGTGGACAAGGCCATAACATTTCATTCTTCCCTTT
TTTGTCTCGTGGAGACGTCTTTTGGATTGTCGTGTAGACAAAgccataaa
attcatttctctTTTTGTCTCGTGGAGACGTCTTTGGATTGTCGTGTGGA
CAAGGccaaaaaacttcattttttcacatttttgttgTGTGAACATACCA
TAACTGTCTTATCTATTCAAATATTGTATCATGTCTGAAACTGAAGATGA
CAAGACATTGAGACTCGCTCGTCGAAAACGAAATGGTAAGAAATCGACTT
GTCATCACTACATCGATGACATCGAGAAACATCTTTCGCAGCTAGATCAA
CTTGAAGAGTCAAAACAAGTGACAGTCCTTGGAGCTCTGAAAACCTTAAG
GGATTCTCTCGTCGATTTGAAGTCTGAATTCTTAGCATTGGATATGGAAT
ATCTAAACCTTCTTGAAAGTGACGATGATTACGACCAAGCGTACGGAGAG
TCTTCCCAACTGCAAGCAAGAATCGACGTTACCACGGGCTCTGTCACCAA
TCTGTTAGATTCGTTGAAATCAAAAGCTTCCAACACCTCTATCTCATCTC
ATGAACACAAGGTTCCAATTTCTGTGAAGTTGCCAAAActtgaaattaaa
aagtttaGTGGAAATCCAAGTCAGTGGAGATCTTTTTGGGATTCTTTCCA
AGCTGCTGTAGGGAAACATTCGTACATCGAAGACGtccaaaagttcaatt
ttttgaagGGCCTCTTAGAAGGAAGAGCTGCCATGGCTATCTCTGGGTTA
GAACTCTCTGATAAGAATTACAAGGAAGCTGTGTCTCTTTTGTCTGATCG
TTTCAGAAGCAAACAAGTCGTGATCACCCATCATATGGACACGCTTTTGC
AGATTCTGCCAGTTAAAGCAGGTACTGATGTCAAACAACTCCGTGCAGTT
TATGACAAGATCGAAATCAACGTCAGAGGATTACAATCACTTGGGATAAA
ACCTGATCAGTATGGCTGCTTACTCGTCCCTGTCATCATGAGCAAGGTTC
CTGAAGACATTCGTTTGATCATTTTAAGGCaattttcttcagaaaattgG
ACATTCGAAGTCCTCTTAAAATGCTTCAAACAAGAGCTAGAGGCACGTGA
GAAATGTGAAGCAGTCTCCAAATCCTCAAAGTCAAAGGAACCCCCATCAG
ACAAGGGTAGTGGTAAAGGCAACAAGGGTGGTGAAGGTAGTCAAAATGGT
GGTGGAGGTGGCAGCTCCCGAAATTTGCTTAATCCCACCGGAAGACAAGA
CAACAAAATCAGGTGTTCATATTGTCGAGGTGAACATAGCTCTGCAAAAT
GTGATATCGTTCAAGACGTAAATACCCGATGGAAATATGTGAAACGCAAT
CACCTCTGTTTCAACTGTCTAGCAAAGAACCATGGTTTGAAAGAATGTAC
GAAAAGGAGTTGCAGAAATTGTGAGGAGAAACATCATGAAAGTCTGTGTC
AGGNAACTGTCTAGCAAAGAACCATGGCTTGAAAGAATGTACGAAAAGGA
GTTGCAGAAATTGTGAGGAGAAACATCATGAAAGTCTGTGTCAGGGAACG
CCTTCGACTGGGCTGATTGCAAGGGCAAAAAAGTTGACACTCTTACAGAC
AGCGAAAGTAAAGGTCTACCACCCTAACGACAACAACCAAGTAAGTAAAG
TACGTATTGTATTCGACATGGGATCAAATGACAGCTATATCACCAAAAGT
ATCAAGGACAAATTGAAACTACCAAGTCTTGGCAAACACAAGATGGTCAT
CTCAGGTTTTGGTGGGTCGTCTAAAGGCTCGAAGGAGTATGACATGACTG
CTTTGAATATAAAGAGTCGTTTTGGTGGTGGTTCTTTTCCTCTCTCTGCT
TTAGTTGTTCCGACGATAACATCTTCTCCCTTAAATCCTTCTGTAGAATT
TCAACATCATGAACATTTAGCTTCTCTCGATCTTGCAGATGACTTTACTA
CACCACAAAAGGAGATTTGTGTGTTGATAGGGGTTGATCAGTACCATCGC
TTTGTTAGTGGAGAAACCGTACGTCATTCTTCTGGACCCGTTGCAACTAA
ATCTGTGTTTGGTTGGTTAGTTAGTGGTCCAATAGAGGGTACATCCTCCT
CCTTCTCTAACTCCTTTCTTCTCTCTTCCCAAACTCCTTCTATTGACGAA
CGTCTTTCTCGCTTCTGGGAACTTGAATCGATGGGTATTGTTGATGAGTC
GATTGAAGATGAGGTAATGACGAAAGAATTCAAAGACTCCATTGTCCATA
ACGGAGAGAGATACGAGGTTCCTCTTCCACGAAAGGATGTACATCCTGAT
CTCCAGGATAACTTTTCTGTTGCCAAACAACGTCTTTTTGGACTGAAGAA
GAAATTCAATCATAACCCTGACCTCAAAGCACAATACAACCAATATTTTG
AAGATCAGCTTGAACAAAATATCATCGAAAAAGTTGACACAAAAGACCAT
GGAAAGCAAGGCTGGACACATTATCTTCCACATCATTGTGTCATTCGTGA
GGAACGAGAAACAACAAAAATGAGAATTGTGTTTGATGCCTCCTGTCAAT
CGAATGACAATCCTTCTCTAAATCAGTGTTTAGAAACTGGTCCATCTTTA
AATCCTGAGCTTTTTGATATTCTTTTACGTTTCCGTCTTTTTCCAATCGC
ACTTGTTAGTGATATTGAGAAGGCTTTCCATATGATCAGTGTTCGACCCG
AAGATCGTGACGTTCTGAGGTTTGTTTGGTTTGACCCAAAGGATAACAAC
AAACTTGTCACTTACCGTCAAAAAAGAGTTTTAATGGGATTAAATGCAAG
CCCCTTTATTCTTACTGCTACTGTTCAAAATCACCTAGAGAAACAGAAAG
GAAATGACTCGAAATATCGGTCCCTCATTGAGGGTATCACAAACTCCTTG
TATGTTGATGATCTATGCACCGGTGAGTTTGACGAAGAGGCTGCATTTCA
ATTCTTTAAAGACTCGAAGAAACTCATGGAGGAANN Run BLAST on NCBI protein sequence of TCONS_00040737-protein >TCONS_00040737-protein ID=TCONS_00040737-protein|Name=TCONS_00040737-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp
MGSNDSYITKSIKDKLKLPSLGKHKMVISGFGGSSKGSKEYDMTALNIKS
RFGGGSFPLSALVVPTITSSPLNPSVEFQHHEHLASLDLADDFTTPQKEI
CVLIGVDQYHRFVSGETVRHSSGPVATKSVFGWLVSGPIEGTSSSFSNSF
LLSSQTPSIDERLSRFWELESMGIVDESIEDEVMTKEFKDSIVHNGERYE
VPLPRKDVHPDLQDNFSVAKQRLFGLKKKFNHNPDLKAQYNQYFEDQLEQ
NIIEKVDTKDHGKQGWTHYLPHHCVIREERETTKMRIVFDASCQSNDNPS
LNQCLETGPSLNPELFDILLRFRLFPIALVSDIEKAFHMISVRPEDRDVL
RFVWFDPKDNNKLVTYRQKRVLMGLNASPFILTATVQNHLEKQKGNDSKY
RSLIEGITNSLYVDDLCTGEFDEEAAFQFFKDSKKLMEE Run BLAST on NCBI transcript from alignment at sc0002543:6852..9945- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040737 ID=TCONS_00040737|Name=TCONS_00040737|organism=Clytia hemisphaerica|type=transcript|length=3094bp|location=Sequence derived from alignment at sc0002543:6852..9945- (Clytia hemisphaerica)
TCATTTGGATTGTCGTGTGGACAAGGCCATAACATTTCATTCTTCCCTTT
TTTGTCTCGTGGAGACGTCTTTTGGATTGTCGTGTAGACAAAGCCATAAA
ATTCATTTCTCTTTTTGTCTCGTGGAGACGTCTTTGGATTGTCGTGTGGA
CAAGGCCAAAAAACTTCATTTTTTCACATTTTTGTTGTGTGAACATACCA
TAACTGTCTTATCTATTCAAATATTGTATCATGTCTGAAACTGAAGATGA
CAAGACATTGAGACTCGCTCGTCGAAAACGAAATGGTAAGAAATCGACTT
GTCATCACTACATCGATGACATCGAGAAACATCTTTCGCAGCTAGATCAA
CTTGAAGAGTCAAAACAAGTGACAGTCCTTGGAGCTCTGAAAACCTTAAG
GGATTCTCTCGTCGATTTGAAGTCTGAATTCTTAGCATTGGATATGGAAT
ATCTAAACCTTCTTGAAAGTGACGATGATTACGACCAAGCGTACGGAGAG
TCTTCCCAACTGCAAGCAAGAATCGACGTTACCACGGGCTCTGTCACCAA
TCTGTTAGATTCGTTGAAATCAAAAGCTTCCAACACCTCTATCTCATCTC
ATGAACACAAGGTTCCAATTTCTGTGAAGTTGCCAAAACTTGAAATTAAA
AAGTTTAGTGGAAATCCAAGTCAGTGGAGATCTTTTTGGGATTCTTTCCA
AGCTGCTGTAGGGAAACATTCGTACATCGAAGACGTCCAAAAGTTCAATT
TTTTGAAGGGCCTCTTAGAAGGAAGAGCTGCCATGGCTATCTCTGGGTTA
GAACTCTCTGATAAGAATTACAAGGAAGCTGTGTCTCTTTTGTCTGATCG
TTTCAGAAGCAAACAAGTCGTGATCACCCATCATATGGACACGCTTTTGC
AGATTCTGCCAGTTAAAGCAGGTACTGATGTCAAACAACTCCGTGCAGTT
TATGACAAGATCGAAATCAACGTCAGAGGATTACAATCACTTGGGATAAA
ACCTGATCAGTATGGCTGCTTACTCGTCCCTGTCATCATGAGCAAGGTTC
CTGAAGACATTCGTTTGATCATTTTAAGGCAATTTTCTTCAGAAAATTGG
ACATTCGAAGTCCTCTTAAAATGCTTCAAACAAGAGCTAGAGGCACGTGA
GAAATGTGAAGCAGTCTCCAAATCCTCAAAGTCAAAGGAACCCCCATCAG
ACAAGGGTAGTGGTAAAGGCAACAAGGGTGGTGAAGGTAGTCAAAATGGT
GGTGGAGGTGGCAGCTCCCGAAATTTGCTTAATCCCACCGGAAGACAAGA
CAACAAAATCAGGTGTTCATATTGTCGAGGTGAACATAGCTCTGCAAAAT
GTGATATCGTTCAAGACGTAAATACCCGATGGAAATATGTGAAACGCAAT
CACCTCTGTTTCAACTGTCTAGCAAAGAACCATGGTTTGAAAGAATGTAC
GAAAAGGAGTTGCAGAAATTGTGAGGAGAAACATCATGAAAGTCTGTGTC
AGGNAACTGTCTAGCAAAGAACCATGGCTTGAAAGAATGTACGAAAAGGA
GTTGCAGAAATTGTGAGGAGAAACATCATGAAAGTCTGTGTCAGGGAACG
CCTTCGACTGGGCTGATTGCAAGGGCAAAAAAGTTGACACTCTTACAGAC
AGCGAAAGTAAAGGTCTACCACCCTAACGACAACAACCAAGTAAGTAAAG
TACGTATTGTATTCGACATNAGTCTGCCACCCTAACGACAACAACCAAGT
AAGTAAAGTACGTATTGTATTTGACATGGGATCAAATGACAGCTATATCA
CCAAAAGTATCAAGGACAAATTGAAACTACCAAGTCTTGGCAAACACAAG
ATGGTCATCTCAGGTTTTGGTGGGTCGTCTAAAGGCTCGAAGGAGTATGA
CATGACTGCTTTGAATATAAAGAGTCGTTTTGGTGGTGGTTCTTTTCCTC
TCTCTGCTTTAGTTGTTCCGACGATAACATCTTCTCCCTTAAATCCTTCT
GTAGAATTTCAACATCATGAACATTTAGCTTCTCTCGATCTTGCAGATGA
CTTTACTACACCACAAAAGGAGATTTGTGTGTTGATAGGGGTTGATCAGT
ACCATCGCTTTGTTAGTGGAGAAACCGTACGTCATTCTTCTGGACCCGTT
GCAACTAAATCTGTGTTTGGTTGGTTAGTTAGTGGTCCAATAGAGGGTAC
ATCCTCCTCCTTCTCTAACTCCTTTCTTCTCTCTTCCCAAACTCCTTCTA
TTGACGAACGTCTTTCTCGCTTCTGGGAACTTGAATCGATGGGTATTGTT
GATGAGTCGATTGAAGATGAGGTAATGACGAAAGAATTCAAAGACTCCAT
TGTCCATAACGGAGAGAGATACGAGGTTCCTCTTCCACGAAAGGATGTAC
ATCCTGATCTCCAGGATAACTTTTCTGTTGCCAAACAACGTCTTTTTGGA
CTGAAGAAGAAATTCAATCATAACCCTGACCTCAAAGCACAATACAACCA
ATATTTTGAAGATCAGCTTGAACAAAATATCATCGAAAAAGTTGACACAA
AAGACCATGGAAAGCAAGGCTGGACACATTATCTTCCACATCATTGTGTC
ATTCGTGAGGAACGAGAAACAACAAAAATGAGAATTGTGTTTGATGCCTC
CTGTCAATCGAATGACAATCCTTCTCTAAATCAGTGTTTAGAAACTGGTC
CATCTTTAAATCCTGAGCTTTTTGATATTCTTTTACGTTTCCGTCTTTTT
CCAATCGCACTTGTTAGTGATATTGAGAAGGCTTTCCATATGATCAGTGT
TCGACCCGAAGATCGTGACGTTCTGAGGTTTGTTTGGTTTGACCCAAAGG
ATAACAACAAACTTGTCACTTACCGTCAAAAAAGAGTTTTAATGGGATTA
AATGCAAGCCCCTTTATTCTTACTGCTACTGTTCAAAATCACCTAGAGAA
ACAGAAAGGAAATGACTCGAAATATCGGTCCCTCATTGAGGGTATCACAA
ACTCCTTGTATGTTGATGATCTATGCACCGGTGAGTTTGACGAAGAGGCT
GCATTTCAATTCTTTAAAGACTCGAAGAAACTCATGGAGGAANN Coding sequence (CDS) from alignment at sc0002543:6852..9945- >TCONS_00040737 ID=TCONS_00040737|Name=TCONS_00040737|organism=Clytia hemisphaerica|type=CDS|length=1317bp|location=Sequence derived from alignment at sc0002543:6852..9945- (Clytia hemisphaerica)
ATGGGATCAAATGACAGCTATATCACCAAAAGTATCAAGGACAAATTGAA
ACTACCAAGTCTTGGCAAACACAAGATGGTCATCTCAGGTTTTGGTGGGT
CGTCTAAAGGCTCGAAGGAGTATGACATGACTGCTTTGAATATAAAGAGT
CGTTTTGGTGGTGGTTCTTTTCCTCTCTCTGCTTTAGTTGTTCCGACGAT
AACATCTTCTCCCTTAAATCCTTCTGTAGAATTTCAACATCATGAACATT
TAGCTTCTCTCGATCTTGCAGATGACTTTACTACACCACAAAAGGAGATT
TGTGTGTTGATAGGGGTTGATCAGTACCATCGCTTTGTTAGTGGAGAAAC
CGTACGTCATTCTTCTGGACCCGTTGCAACTAAATCTGTGTTTGGTTGGT
TAGTTAGTGGTCCAATAGAGGGTACATCCTCCTCCTTCTCTAACTCCTTT
CTTCTCTCTTCCCAAACTCCTTCTATTGACGAACGTCTTTCTCGCTTCTG
GGAACTTGAATCGATGGGTATTGTTGATGAGTCGATTGAAGATGAGGTAA
TGACGAAAGAATTCAAAGACTCCATTGTCCATAACGGAGAGAGATACGAG
GTTCCTCTTCCACGAAAGGATGTACATCCTGATCTCCAGGATAACTTTTC
TGTTGCCAAACAACGTCTTTTTGGACTGAAGAAGAAATTCAATCATAACC
CTGACCTCAAAGCACAATACAACCAATATTTTGAAGATCAGCTTGAACAA
AATATCATCGAAAAAGTTGACACAAAAGACCATGGAAAGCAAGGCTGGAC
ACATTATCTTCCACATCATTGTGTCATTCGTGAGGAACGAGAAACAACAA
AAATGAGAATTGTGTTTGATGCCTCCTGTCAATCGAATGACAATCCTTCT
CTAAATCAGTGTTTAGAAACTGGTCCATCTTTAAATCCTGAGCTTTTTGA
TATTCTTTTACGTTTCCGTCTTTTTCCAATCGCACTTGTTAGTGATATTG
AGAAGGCTTTCCATATGATCAGTGTTCGACCCGAAGATCGTGACGTTCTG
AGGTTTGTTTGGTTTGACCCAAAGGATAACAACAAACTTGTCACTTACCG
TCAAAAAAGAGTTTTAATGGGATTAAATGCAAGCCCCTTTATTCTTACTG
CTACTGTTCAAAATCACCTAGAGAAACAGAAAGGAAATGACTCGAAATAT
CGGTCCCTCATTGAGGGTATCACAAACTCCTTGTATGTTGATGATCTATG
CACCGGTGAGTTTGACGAAGAGGCTGCATTTCAATTCTTTAAAGACTCGA
AGAAACTCATGGAGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040737-exon-sc0002543-1575043694:8229..9945 | TCONS_00040737-exon-sc0002543-1575043694:8229..9945 | Clytia hemisphaerica | exon |
| TCONS_00040737-exon-sc0002543-1575043694:6852..8170 | TCONS_00040737-exon-sc0002543-1575043694:6852..8170 | Clytia hemisphaerica | exon |
| TCONS_00040737-exon-sc0002543-1510915933:8229..9945 | TCONS_00040737-exon-sc0002543-1510915933:8229..9945 | Clytia hemisphaerica | exon |
| TCONS_00040737-exon-sc0002543-1510915933:6852..8170 | TCONS_00040737-exon-sc0002543-1510915933:6852..8170 | Clytia hemisphaerica | exon |
| TCONS_00040737-exon-sc0002543-1491911889:8229..9945 | TCONS_00040737-exon-sc0002543-1491911889:8229..9945 | Clytia hemisphaerica | exon |
| TCONS_00040737-exon-sc0002543-1491911889:6852..8170 | TCONS_00040737-exon-sc0002543-1491911889:6852..8170 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002543 | supercontig | sc0002543:6852..9945 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR008737 | Peptidase_asp_put |
| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
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