TCONS_00040736 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040736
Unique NameTCONS_00040736
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1058

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040736 ID=TCONS_00040736|Name=TCONS_00040736|organism=Clytia hemisphaerica|type=transcript|length=1058bp
caaaaatgatttatttgcctgcataatttaaactaaaatttacaatatGT
GAAAATTACAATATAATTAGGTTGGGGAACAGGCCATCCATATAGAGGTT
ACCCGACTAATCAATGGGATGACTACCTGGTTGCAAGTATATGTTTGGGA
TTTTAATAATAGGGGATAGATTATTACACAACAATATATGCGAAAACGAC
AACATCAATTTTTATGAACACTCCTATCGAATTAATCCCAGATCTGTCAG
TCGCGACGAAAGAATGGAAATGAGATGACGGAATAATCAACCCACGTTTG
GTACTAAGTCACTACCCTGGAATGGATATGCAGACGATCTCATTCTATTC
CTTCTCACTGAATCTGATCTTCGAAAATCGGCGAATCTCTTGAACCAAAC
ATTCACGAAATTCGGACTGAACATAAACGCGCAAAAAACTGAATCCATGA
TCCTAAACCAATCGGAAGGTGAATACCCAAAGTCAATTCTCAACTTAAGA
AACACTGTTATCAAAAATGTTGAGAATTTTATCTATCTTGGCACATATAT
CCGTCTCGATCAACCTAACACAGGATATCCAGAGATCAATCATCGAATAC
AGTTAGCGATCAGTAAATTCACTGATATGGGCAACTTGCTCCAAAATATG
AGGATAAATCTTAAAACGCGTATAAAATTTCTGAACAGTTTTGTACGAAG
CACGCTGACATATGCGTGTCAAAATTGGAACACTAACACCAATCAGATGG
ATCGACTTGACGCTACCTATCGTGGATTTCTACGACGTATGGTTCGAGGA
GGTTATCGATAcataaatgaaagtgaaaatgattATCGATATTATATCAC
CAATGAAGAACTACATAACCTTTGTGGGACTTCAGATTTGTCGACTTTTA
TTCGTAAGCAACAACAAAATTATGTCCAACACGTTATTCGAATGCCCGTA
CATCGTTCCGTTAAATTGCTTGCCTTCAATTGTGATAAGTACACAAAAAG
AGAAAGGCCTTGTAAAACTCTTCTTGATCAAGTGGTTGATTCGAGTGGAC
TGTCTTTG
Run BLAST on NCBI

protein sequence of TCONS_00040736-protein

>TCONS_00040736-protein ID=TCONS_00040736-protein|Name=TCONS_00040736-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MILNQSEGEYPKSILNLRNTVIKNVENFIYLGTYIRLDQPNTGYPEINHR
IQLAISKFTDMGNLLQNMRINLKTRIKFLNSFVRSTLTYACQNWNTNTNQ
MDRLDATYRGFLRRMVRGGYRYINESENDYRYYITNEELHNLCGTSDLST
FIRKQQQNYVQHVIRMPVHRSVKLLAFNCDKYTKRERPCKTLLDQVVDSS
GLSL
Run BLAST on NCBI

transcript from alignment at sc0002542:16216..17273

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040736 ID=TCONS_00040736|Name=TCONS_00040736|organism=Clytia hemisphaerica|type=transcript|length=1058bp|location=Sequence derived from alignment at sc0002542:16216..17273 (Clytia hemisphaerica)
CAAAGACAGTCCACTCGAATCAACCACTTGATCAAGAAGAGTTTTACAAG
GCCTTTCTCTTTTTGTGTACTTATCACAATTGAAGGCAAGCAATTTAACG
GAACGATGTACGGGCATTCGAATAACGTGTTGGACATAATTTTGTTGTTG
CTTACGAATAAAAGTCGACAAATCTGAAGTCCCACAAAGGTTATGTAGTT
CTTCATTGGTGATATAATATCGATaatcattttcactttcatttatgTAT
CGATAACCTCCTCGAACCATACGTCGTAGAAATCCACGATAGGTAGCGTC
AAGTCGATCCATCTGATTGGTGTTAGTGTTCCAATTTTGACACGCATATG
TCAGCGTGCTTCGTACAAAACTGTTCAGAAATTTTATACGCGTTTTAAGA
TTTATCCTCATATTTTGGAGCAAGTTGCCCATATCAGTGAATTTACTGAT
CGCTAACTGTATTCGATGATTGATCTCTGGATATCCTGTGTTAGGTTGAT
CGAGACGGATATATGTGCCAAGATAGATAAAATTCTCAACATTTTTGATA
ACAGTGTTTCTTAAGTTGAGAATTGACTTTGGGTATTCACCTTCCGATTG
GTTTAGGATCATGGATTCAGTTTTTTGCGCGTTTATGTTCAGTCCGAATT
TCGTGAATGTTTGGTTCAAGAGATTCGCCGATTTTCGAAGATCAGATTCA
GTGAGAAGGAATAGAATGAGATCGTCTGCATATCCATTCCAGGGTAGTGA
CTTAGTACCAAACGTGGGTTGATTATTCCGTCATCTCATTTCCATTCTTT
CGTCGCGACTGACAGATCTGGGATTAATTCGATAGGAGTGTTCATAAAAA
TTGATGTTGTCGTTTTCGCATATATTGTTGTGTAATAATCTATCCCCTAT
TATTAAAATCCCAAACATATACTTGCAACCAGGTAGTCATCCCATTGATT
AGTCGGGTAACCTCTATATGGATGGCCTGTTCCCCAACCTAATTATATTG
TAATTTTCACatattgtaaattttagtttaaattatgcaggcaaataaat
catttttg

Coding sequence (CDS) from alignment at sc0002542:16216..17273

>TCONS_00040736 ID=TCONS_00040736|Name=TCONS_00040736|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at sc0002542:16216..17273 (Clytia hemisphaerica)
CAAAGACAGTCCACTCGAATCAACCACTTGATCAAGAAGAGTTTTACAAG
GCCTTTCTCTTTTTGTGTACTTATCACAATTGAAGGCAAGCAATTTAACG
GAACGATGTACGGGCATTCGAATAACGTGTTGGACATAATTTTGTTGTTG
CTTACGAATAAAAGTCGACAAATCTGAAGTCCCACAAAGGTTATGTAGTT
CTTCATTGGTGATATAATATCGATaatcattttcactttcatttatgTAT
CGATAACCTCCTCGAACCATACGTCGTAGAAATCCACGATAGGTAGCGTC
AAGTCGATCCATCTGATTGGTGTTAGTGTTCCAATTTTGACACGCATATG
TCAGCGTGCTTCGTACAAAACTGTTCAGAAATTTTATACGCGTTTTAAGA
TTTATCCTCATATTTTGGAGCAAGTTGCCCATATCAGTGAATTTACTGAT
CGCTAACTGTATTCGATGATTGATCTCTGGATATCCTGTGTTAGGTTGAT
CGAGACGGATATATGTGCCAAGATAGATAAAATTCTCAACATTTTTGATA
ACAGTGTTTCTTAAGTTGAGAATTGACTTTGGGTATTCACCTTCCGATTG
GTTTAGGATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024817XLOC_024817Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040736-exon-sc0002542-1491911889:16216..17273TCONS_00040736-exon-sc0002542-1491911889:16216..17273Clytia hemisphaericaexon
TCONS_00040736-exon-sc0002542-1510915933:16216..17273TCONS_00040736-exon-sc0002542-1510915933:16216..17273Clytia hemisphaericaexon
TCONS_00040736-exon-sc0002542-1575043694:16216..17273TCONS_00040736-exon-sc0002542-1575043694:16216..17273Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040736-proteinTCONS_00040736-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002542supercontigsc0002542:16216..17273 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.18288	1.38955	1.46637	1.37575	0.780561	0.822106	0.556942	1.08816	0.233972	0.461525	0.447553	0.161007	0.926091	0.816112	0.187173	0.598687	0.125479	0.215954	0.71074	0.803354	0.34296	0.164863	0.127017	0.304919	1.04935	1.24326	0.482102	0.48921	0.585629	0.511441
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040736 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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